Family GP001080_V3


Family ID
60S acidic ribosomal family (plant-specificity: 19%) [OBSOLETE]
GP001080_V3 OBSOLETE  add to my list
Family name 60S acidic ribosomal family
Creation date (last update: 2016-09-27 12:17:20)
Level 1
Type family
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments
Sequences 136
Associated GPv4 family
60S acidic ribosomal family (plant-specificity: 30%)
GP001080




Level Family ID (number of sequences)
1 GP001080_V3 (136)
2
Large subunit ribosomal protein LP2 family (plant-specificity: 9%) [OBSOLETE]
GP016170_V3 (123)
(plant-specificity: 100%) [OBSOLETE]
GP024099_V3 (11) GP038767_V3 (2)
3
(plant-specificity: 9%) [OBSOLETE]
GP040768_V3 (123)
(plant-specificity: 100%) [OBSOLETE]
GP051544_V3 (7) GP055367_V3 (4) GP068206_V3 (2)
4
(plant-specificity: 9%) [OBSOLETE]
GP070269_V3 (115) GP084494_V3 (5) GP088532_V3 (3) GP087219_V3 (4) GP090711_V3 (3) GP087220_V3 (4) GP103000_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 136
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
5 5
1 1
5 5
3 3
6 7
8 17
8 21
5 5
5 5
5 5
5 5
4 4
3 3
3 3
3 3
3 3
29 29
6 10


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[Masking step 1 details] [Masking step 2 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
136 109 (80%) 109 (80%) [65; 115; 317] ~125 67 67