Family GP001159_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 100%) [OBSOLETE]
GP001159_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:18:30)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 123
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 100%)
GP001159




Level Family ID (number of sequences)
1 GP001159_V3 (123)
2
(plant-specificity: 100%) [OBSOLETE]
GP016256_V3 (117) GP026502_V3 (2) GP029413_V3 (2) GP032937_V3 (2)
3
(plant-specificity: 100%) [OBSOLETE]
GP041414_V3 (85)
(plant-specificity: 100%) [OBSOLETE]
GP048333_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP051136_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP051909_V3 (6) GP060581_V3 (2) GP060684_V3 (2) GP060595_V3 (2) GP061320_V3 (2)
4
(plant-specificity: 100%) [OBSOLETE]
GP074494_V3 (34)
(plant-specificity: 100%) [OBSOLETE]
GP076246_V3 (27)
(plant-specificity: 100%) [OBSOLETE]
GP077807_V3 (20)
(plant-specificity: 100%) [OBSOLETE]
GP080542_V3 (9) GP094791_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP078343_V3 (17) GP080542_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP082828_V3 (6) GP093557_V3 (2) GP093853_V3 (2) GP093587_V3 (2) GP094935_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 123
Species Count (w/o splice) Count (w/ splice)
3 3
8 8
4 4
4 6
2 2
4 11
2 3
3 3
5 5
4 4
4 4
9 13
5 5
11 11
7 13
6 6
5 5
16 17


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[Masking step 1 details] [Masking step 2 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
123 101 (82%) 101 (82%) [67; 358; 571] ~324 8 8