Family GP001170_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 70%) [OBSOLETE]
GP001170_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:18:40)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 122
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 60%)
GP001170




Level Family ID (number of sequences)
1 GP001170_V3 (122)
2
(plant-specificity: 50%) [OBSOLETE]
GP016741_V3 (87)
(plant-specificity: 100%) [OBSOLETE]
GP020811_V3 (30)
(plant-specificity: 100%) [OBSOLETE]
GP026451_V3 (5)
3
(plant-specificity: 50%) [OBSOLETE]
GP041374_V3 (87)
(plant-specificity: 100%) [OBSOLETE]
GP048313_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP049053_V3 (13)
(plant-specificity: 100%) [OBSOLETE]
GP052802_V3 (5)
4
(plant-specificity: 50%) [OBSOLETE]
GP071145_V3 (74)
(plant-specificity: 97%) [OBSOLETE]
GP079207_V3 (13)
(plant-specificity: 100%) [OBSOLETE]
GP078320_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP079208_V3 (13) GP078320_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP083850_V3 (5)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 122
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
1 1
1 1
7 7
11 11
4 4
5 8
8 15
6 6
3 3
5 5
3 3
3 3
6 9
3 3
6 6
3 9
8 8
6 6
10 11


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Download alignment file (filtered):[ FASTA ]


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
122 102 (84%) 102 (84%) [93; 557; 1287] ~543 495 495