Family GP001170_V3
Family ID |
Expressed or hypothetical protein group (plant-specificity: 70%) [OBSOLETE]
GP001170_V3 OBSOLETE
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|
---|---|
Family name | Expressed or hypothetical protein group |
Creation date | (last update: 2016-09-27 12:18:40) |
Level | 1 |
Type | group |
Owner | greenphyl_v3 |
Evidence | N/A |
Access | public - read only |
Family description / comments | |
Sequences | 122 |
Associated GPv4 family |
Expressed or hypothetical protein group (plant-specificity: 60%)
GP001170
|
Level | Family ID (number of sequences) |
---|---|
1 | GP001170_V3 (122) |
2 |
(plant-specificity: 50%) [OBSOLETE]
GP016741_V3
(87)
(plant-specificity: 100%) [OBSOLETE]
GP020811_V3
(30)
(plant-specificity: 100%) [OBSOLETE]
GP026451_V3
(5)
|
3 |
(plant-specificity: 50%) [OBSOLETE]
GP041374_V3
(87)
(plant-specificity: 100%) [OBSOLETE]
GP048313_V3
(17)
(plant-specificity: 100%) [OBSOLETE]
GP049053_V3
(13)
(plant-specificity: 100%) [OBSOLETE]
GP052802_V3
(5)
|
4 |
(plant-specificity: 50%) [OBSOLETE]
GP071145_V3
(74)
(plant-specificity: 97%) [OBSOLETE]
GP079207_V3
(13)
(plant-specificity: 100%) [OBSOLETE]
GP078320_V3
(17)
(plant-specificity: 100%) [OBSOLETE]
GP079208_V3
(13)
GP078320_V3
(17)
(plant-specificity: 100%) [OBSOLETE]
GP083850_V3
(5)
|
Table 1:
This table displays which relationship has the selected custom family with other
families.
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Download alignment file (filtered):[ FASTA ]
[Masking step 1 details] [Masking step 2 details] [Filtration details]
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Alignment and filtration statistics:
Overall family sequences | Sequences used for alignment (w/o splice) | Sequences kept after filtration | [min; median; max] ~average sequence length | Alignment length | Masked alignment length |
---|---|---|---|---|---|
122 | 102 (84%) | 102 (84%) | [93; 557; 1287] ~543 | 495 | 495 |