Family GP001177_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 100%) [OBSOLETE]
GP001177_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:18:46)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 120
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 100%)
GP001177




Level Family ID (number of sequences)
1 GP001177_V3 (120)
2
(plant-specificity: 100%) [OBSOLETE]
GP016748_V3 (87)
(plant-specificity: 100%) [OBSOLETE]
GP021337_V3 (28)
(plant-specificity: 100%) [OBSOLETE]
GP026543_V3 (5)
3
(plant-specificity: 100%) [OBSOLETE]
GP041433_V3 (85) GP061254_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP046412_V3 (28)
(plant-specificity: 100%) [OBSOLETE]
GP052950_V3 (5)
4
(plant-specificity: 100%) [OBSOLETE]
GP070831_V3 (84) GP086082_V3 (4) GP094833_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP076831_V3 (25) GP089670_V3 (3) GP086082_V3 (4) GP101209_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 120
Species Count (w/o splice) Count (w/ splice)
5 5
2 2
10 10
2 2
2 6
2 2
6 12
3 3
5 5
4 4
3 3
3 3
6 11
4 4
13 13
4 6
11 11
4 7
10 11


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
120 99 (82%) 99 (82%) [68; 174; 472] ~178 133 133