Family GP001248_V3


Family ID
alternative oxidase family (plant-specificity: 9%) [OBSOLETE]
GP001248_V3 OBSOLETE  add to my list
Family name alternative oxidase family
Creation date (last update: 2016-09-27 12:19:47)
Level 1
Type family
Owner greenphyl_v3
Evidence IEA:PIRSF
Access public - read only
Family description / comments
Sequences 112
Associated GPv4 family
alternative oxidase family
GP001248




Level Family ID (number of sequences)
1 GP001248_V3 (112)
2
(plant-specificity: 25%) [OBSOLETE]
GP017370_V3 (66)
(plant-specificity: 11%) [OBSOLETE]
GP018495_V3 (46)
3
(plant-specificity: 25%) [OBSOLETE]
GP042036_V3 (66)
(plant-specificity: 11%) [OBSOLETE]
GP043211_V3 (46)
4
(plant-specificity: 25%) [OBSOLETE]
GP071444_V3 (66)
(plant-specificity: 11%) [OBSOLETE]
GP072723_V3 (46)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 112
Species Count (w/o splice) Count (w/ splice)
3 3
4 4
3 3
4 4
7 7
6 6
2 2
2 4
4 4
6 10
6 7
7 7
6 6
3 3
3 3
6 6
3 3
2 2
3 4
8 8
5 7
6 9


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Download alignment file (filtered):[ FASTA ]


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
112 99 (88%) 99 (88%) [65; 331; 2118] ~322 297 297