Family GP001264_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 92%) [OBSOLETE]
GP001264_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:20:01)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 112
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 96%)
GP001264




Level Family ID (number of sequences)
1 GP001264_V3 (112)
2
(plant-specificity: 92%) [OBSOLETE]
GP017924_V3 (56)
(plant-specificity: 100%) [OBSOLETE]
GP018168_V3 (50) GP027692_V3 (4) GP032651_V3 (2)
3
(plant-specificity: 92%) [OBSOLETE]
GP043511_V3 (43)
(plant-specificity: 100%) [OBSOLETE]
GP051149_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP051866_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP044199_V3 (38)
(plant-specificity: 100%) [OBSOLETE]
GP049243_V3 (12) GP054443_V3 (4) GP060884_V3 (2)
4
(plant-specificity: 92%) [OBSOLETE]
GP073260_V3 (41) GP088625_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP081778_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP082746_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP074088_V3 (36) GP094313_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP081780_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP084103_V3 (5) GP086065_V3 (4) GP094246_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 112
Species Count (w/o splice) Count (w/ splice)
4 4
3 3
6 6
4 4
5 6
5 5
6 12
6 6
1 1
5 5
5 5
4 4
6 9
4 4
6 6
5 10
6 6
1 1
12 15


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[Masking step 1 details] [Masking step 2 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
112 94 (84%) 94 (84%) [128; 431; 1335] ~441 130 130