Family GP001340_V3


Family ID
Anticodon-binding superfamily [OBSOLETE]
GP001340_V3 OBSOLETE  add to my list
Family name Anticodon-binding superfamily
Creation date (last update: 2016-09-27 12:21:06)
Level 1
Type superfamily
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments
Sequences 116
Associated GPv4 family
Anticodon-binding superfamily (plant-specificity: 19%)
GP001340




Level Family ID (number of sequences)
1 GP001340_V3 (116)
2 GP018553_V3 (48)
(plant-specificity: 9%) [OBSOLETE]
GP019818_V3 (35)
Histidyl-tRNA synthetase, class IIa family [OBSOLETE]
GP020576_V3 (31) GP033877_V3 (2)
3 GP043191_V3 (46) GP062895_V3 (2)
(plant-specificity: 9%) [OBSOLETE]
GP044739_V3 (35) GP045581_V3 (31) GP062464_V3 (2)
4
(plant-specificity: 9%) [OBSOLETE]
GP073559_V3 (39) GP086113_V3 (4) GP089092_V3 (3) GP096900_V3 (2)
(plant-specificity: 9%) [OBSOLETE]
GP074330_V3 (35) GP075226_V3 (31) GP096339_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 116
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
2 2
2 2
5 5
5 5
5 5
9 9
3 3
3 7
5 6
4 4
4 4
6 6
4 4
7 10
4 4
7 7
4 5
10 10
8 8
5 5


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
116 107 (92%) 107 (92%) [89; 458; 2404] ~541 201 201