Family GP001391_V3


Family ID
(Uracil-5)-methyltransferase Family [OBSOLETE]
GP001391_V3 OBSOLETE  add to my list
Family name (Uracil-5)-methyltransferase Family
Creation date (last update: 2016-09-27 12:21:51)
Level 1
Type family
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments
Sequences 82
Associated GPv4 family
(Uracil-5)-methyltransferase Family (plant-specificity: 12%)
GP001391




Level Family ID (number of sequences)
1 GP001391_V3 (82)
2
(Uracil-5)-methyltransferase family (plant-specificity: 11%) [OBSOLETE]
GP019646_V3 (36)
23S rRNA methyltransferase/RumA family [OBSOLETE]
GP020769_V3 (30)
(plant-specificity: 100%) [OBSOLETE]
GP023768_V3 (12)
TRNA (uracil-5-)-methyltransferase family [OBSOLETE]
GP027682_V3 (4)
3
(plant-specificity: 11%) [OBSOLETE]
GP044536_V3 (36) GP045792_V3 (30)
(plant-specificity: 100%) [OBSOLETE]
GP049303_V3 (12) GP054425_V3 (4)
4
(plant-specificity: 11%) [OBSOLETE]
GP074101_V3 (36) GP075432_V3 (30)
(plant-specificity: 100%) [OBSOLETE]
GP079554_V3 (12) GP086038_V3 (4)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 82
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
5 5
15 15
3 3
3 3
3 3
2 3
3 3
3 9
2 2
2 2
2 2
2 2
2 2
3 3
2 2
2 2
2 5
4 4
2 2
4 6


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
82 70 (85%) 70 (85%) [74; 567; 1069] ~575 166 166