Family GP000216_V3


Family ID
Zinc finger superfamily (plant-specificity: 90%) [OBSOLETE]
GP000216_V3 OBSOLETE  add to my list
Family name Zinc finger superfamily
Creation date (last update: 2016-09-27 12:04:51)
Level 1
Type superfamily
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments
Sequences 471
Associated GPv4 family
Zinc finger superfamily (plant-specificity: 80%)
GP000216




Level Family ID (number of sequences)
1 GP000216_V3 (471)
2
(plant-specificity: 100%) [OBSOLETE]
GP015383_V3 (264)
(plant-specificity: 100%) [OBSOLETE]
GP016203_V3 (118)
(plant-specificity: 100%) [OBSOLETE]
GP018022_V3 (53) GP019953_V3 (34) GP035472_V3 (2)
3
(plant-specificity: 100%) [OBSOLETE]
GP040054_V3 (262) GP060971_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP040904_V3 (112) GP060939_V3 (2) GP060962_V3 (2) GP061380_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP042701_V3 (53) GP044893_V3 (34) GP064385_V3 (2)
4
(plant-specificity: 100%) [OBSOLETE]
GP069796_V3 (180) GP070991_V3 (79) GP084148_V3 (3) GP094421_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP070494_V3 (100)
(plant-specificity: 100%) [OBSOLETE]
GP079478_V3 (12) GP094338_V3 (2) GP094391_V3 (2) GP095027_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP072172_V3 (53) GP074509_V3 (34) GP098657_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 471
Species Count (w/o splice) Count (w/ splice)
3 3
4 4
2 2
16 16
6 6
15 15
19 19
14 16
12 17
23 39
23 23
21 21
17 17
27 27
18 18
32 37
19 19
32 32
14 26
38 38
27 28
34 48


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[Masking step 1 details] [Masking step 2 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
471 416 (88%) 416 (88%) [42; 508; 2845] ~627 40 40