Family GP000388_V3


Family ID
Ammonium transporter family (plant-specificity: 30%) [OBSOLETE]
GP000388_V3 OBSOLETE  add to my list
Family name Ammonium transporter family
Creation date (last update: 2016-09-27 12:07:17)
Level 1
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 307
Associated GPv4 family
Ammonium transporter subfamily (plant-specificity: 19%)
GP000388




Level Family ID (number of sequences)
1 GP000388_V3 (307)
2 GP015919_V3 (147)
(plant-specificity: 30%) [OBSOLETE]
GP016466_V3 (101)
(plant-specificity: 33%) [OBSOLETE]
GP020674_V3 (31)
(plant-specificity: 100%) [OBSOLETE]
GP021298_V3 (28)
3 GP040568_V3 (147)
(plant-specificity: 30%) [OBSOLETE]
GP041088_V3 (101)
(plant-specificity: 33%) [OBSOLETE]
GP045685_V3 (31)
(plant-specificity: 100%) [OBSOLETE]
GP046373_V3 (28)
4 GP070010_V3 (147) GP070102_V3 (133) GP070102_V3 (133) GP070102_V3 (133)
(plant-specificity: 100%) [OBSOLETE]
GP076312_V3 (27)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 307
Species Count (w/o splice) Count (w/ splice)
3 3
8 8
5 5
15 15
6 6
16 16
13 13
16 18
10 13
11 20
13 13
14 14
8 8
6 6
16 16
36 37
12 12
16 16
10 10
27 27
8 11
20 20


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
307 289 (94%) 289 (94%) [66; 468; 1110] ~395 319 319