Family GP000412_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 19%) [OBSOLETE]
GP000412_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:07:35)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 297
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 9%)
GP000412




Level Family ID (number of sequences)
1 GP000412_V3 (297)
2
(plant-specificity: 44%) [OBSOLETE]
GP018790_V3 (43)
(plant-specificity: 40%) [OBSOLETE]
GP021138_V3 (29)
(plant-specificity: 60%) [OBSOLETE]
GP021531_V3 (26)
(plant-specificity: 50%) [OBSOLETE]
GP022066_V3 (24)
(plant-specificity: 30%) [OBSOLETE]
GP022645_V3 (20)
(plant-specificity: 19%) [OBSOLETE]
GP022658_V3 (20)
(plant-specificity: 14%) [OBSOLETE]
GP022892_V3 (18)
(plant-specificity: 71%) [OBSOLETE]
GP023580_V3 (13)
(plant-specificity: 50%) [OBSOLETE]
GP023604_V3 (13) GP023736_V3 (12)
(plant-specificity: 37%) [OBSOLETE]
GP023778_V3 (12)
(plant-specificity: 66%) [OBSOLETE]
GP024580_V3 (9)
(plant-specificity: 55%) [OBSOLETE]
GP024592_V3 (9)
(plant-specificity: 50%) [OBSOLETE]
GP024594_V3 (10)
(plant-specificity: 12%) [OBSOLETE]
GP024869_V3 (8)
(plant-specificity: 42%) [OBSOLETE]
GP025342_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP027462_V3 (5) GP027804_V3 (4) GP029549_V3 (3) GP030384_V3 (3) GP030989_V3 (3) GP032571_V3 (2) GP032704_V3 (2) GP034037_V3 (2)
3
(plant-specificity: 42%) [OBSOLETE]
GP044096_V3 (39) GP054250_V3 (4)
(plant-specificity: 30%) [OBSOLETE]
GP048063_V3 (19)
(plant-specificity: 60%) [OBSOLETE]
GP049963_V3 (10)
(plant-specificity: 83%) [OBSOLETE]
GP048082_V3 (19)
(plant-specificity: 57%) [OBSOLETE]
GP051321_V3 (7)
(plant-specificity: 50%) [OBSOLETE]
GP047224_V3 (24)
(plant-specificity: 30%) [OBSOLETE]
GP048667_V3 (15) GP056587_V3 (3) GP062610_V3 (2)
(plant-specificity: 19%) [OBSOLETE]
GP047917_V3 (20)
(plant-specificity: 14%) [OBSOLETE]
GP048208_V3 (18)
(plant-specificity: 71%) [OBSOLETE]
GP049040_V3 (13)
(plant-specificity: 50%) [OBSOLETE]
GP049079_V3 (13) GP049252_V3 (12)
(plant-specificity: 50%) [OBSOLETE]
GP049911_V3 (10) GP060938_V3 (2)
(plant-specificity: 66%) [OBSOLETE]
GP050346_V3 (9)
(plant-specificity: 55%) [OBSOLETE]
GP050358_V3 (9)
(plant-specificity: 50%) [OBSOLETE]
GP049965_V3 (10)
(plant-specificity: 12%) [OBSOLETE]
GP050749_V3 (8) GP055369_V3 (4) GP057042_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP054051_V3 (5) GP054604_V3 (4) GP056895_V3 (3) GP057944_V3 (3) GP058690_V3 (3) GP060717_V3 (2) GP060988_V3 (2) GP062661_V3 (2)
4
(plant-specificity: 40%) [OBSOLETE]
GP074259_V3 (36) GP088466_V3 (3) GP085702_V3 (4)
(plant-specificity: 22%) [OBSOLETE]
GP079295_V3 (13)
(plant-specificity: 88%) [OBSOLETE]
GP084564_V3 (5) GP088533_V3 (3)
(plant-specificity: 60%) [OBSOLETE]
GP080352_V3 (10)
(plant-specificity: 83%) [OBSOLETE]
GP078030_V3 (19)
(plant-specificity: 57%) [OBSOLETE]
GP082075_V3 (7)
(plant-specificity: 50%) [OBSOLETE]
GP077267_V3 (23) GP085675_V3 (4)
(plant-specificity: 60%) [OBSOLETE]
GP080220_V3 (10)
(plant-specificity: 16%) [OBSOLETE]
GP082818_V3 (6) GP085959_V3 (4) GP082818_V3 (6) GP096516_V3 (2)
(plant-specificity: 19%) [OBSOLETE]
GP077837_V3 (20)
(plant-specificity: 14%) [OBSOLETE]
GP078213_V3 (18)
(plant-specificity: 100%) [OBSOLETE]
GP080299_V3 (10) GP085675_V3 (4)
(plant-specificity: 50%) [OBSOLETE]
GP079286_V3 (13)
(plant-specificity: 14%) [OBSOLETE]
GP082062_V3 (7) GP086632_V3 (4) GP093480_V3 (2)
(plant-specificity: 42%) [OBSOLETE]
GP082038_V3 (7) GP089147_V3 (3) GP094336_V3 (2)
(plant-specificity: 62%) [OBSOLETE]
GP081428_V3 (8)
(plant-specificity: 55%) [OBSOLETE]
GP080825_V3 (9)
(plant-specificity: 16%) [OBSOLETE]
GP083203_V3 (6) GP094985_V3 (2) GP095072_V3 (2) GP079295_V3 (13)
(plant-specificity: 16%) [OBSOLETE]
GP082996_V3 (6) GP087224_V3 (4) GP089461_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP085455_V3 (5) GP086320_V3 (4) GP089270_V3 (3) GP090586_V3 (3) GP091442_V3 (3) GP085959_V3 (4) GP094466_V3 (2) GP096576_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 297
Species Count (w/o splice) Count (w/ splice)
33 33
41 41
58 59
113 113
3 3
13 13
11 11
13 13
11 11


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
297 296 (100%) 296 (100%) [65; 254; 1004] ~272 243 243