Family GP000441_V3


Family ID
Chaperonin Cpn60 Family (plant-specificity: 30%) [OBSOLETE]
GP000441_V3 OBSOLETE  add to my list
Family name Chaperonin Cpn60 Family
Creation date (last update: 2016-09-27 12:08:01)
Level 1
Type family
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments
Sequences 282
Associated GPv4 family
Chaperonin Cpn60 Family
GP000441




Level Family ID (number of sequences)
1 GP000441_V3 (282)
2
Chaperonin GroEL subfamily [OBSOLETE]
GP015450_V3 (246)
(plant-specificity: 99%) [OBSOLETE]
GP021415_V3 (27)
(plant-specificity: 100%) [OBSOLETE]
GP027393_V3 (5) GP028371_V3 (4)
3 GP040106_V3 (246)
(plant-specificity: 99%) [OBSOLETE]
GP046490_V3 (27)
(plant-specificity: 100%) [OBSOLETE]
GP053982_V3 (5) GP055334_V3 (4)
4 GP069597_V3 (245)
(plant-specificity: 99%) [OBSOLETE]
GP076209_V3 (27)
(plant-specificity: 100%) [OBSOLETE]
GP085382_V3 (5) GP087187_V3 (4)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 282
Species Count (w/o splice) Count (w/ splice)
3 3
4 4
3 3
10 10
7 7
14 14
17 17
10 14
13 19
16 28
10 11
10 10
10 10
9 9
9 9
21 25
8 8
11 11
8 15
27 27
6 7
16 21


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
282 242 (86%) 242 (86%) [55; 579; 1227] ~516 462 462