Family GP000576_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 9%) [OBSOLETE]
GP000576_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:09:56)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 237




Level Family ID (number of sequences)
1 GP000576_V3 (237)
2
(plant-specificity: 9%) [OBSOLETE]
GP016437_V3 (101)
(plant-specificity: 90%) [OBSOLETE]
GP018682_V3 (44)
(plant-specificity: 60%) [OBSOLETE]
GP019194_V3 (41)
(plant-specificity: 30%) [OBSOLETE]
GP020337_V3 (32)
(plant-specificity: 100%) [OBSOLETE]
GP024655_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP025195_V3 (7) GP030670_V3 (2) GP030733_V3 (2) GP035179_V3 (2) GP035336_V3 (2)
3
(plant-specificity: 50%) [OBSOLETE]
GP042283_V3 (61) GP047588_V3 (23)
(plant-specificity: 57%) [OBSOLETE]
GP051584_V3 (7)
(plant-specificity: 55%) [OBSOLETE]
GP051913_V3 (6) GP055202_V3 (4)
(plant-specificity: 90%) [OBSOLETE]
GP043434_V3 (44)
(plant-specificity: 60%) [OBSOLETE]
GP043877_V3 (41)
(plant-specificity: 30%) [OBSOLETE]
GP046207_V3 (29) GP058168_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP050428_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP051141_V3 (7) GP063809_V3 (2) GP064011_V3 (2) GP064048_V3 (2) GP064238_V3 (2)
4
(plant-specificity: 50%) [OBSOLETE]
GP074487_V3 (35)
(plant-specificity: 9%) [OBSOLETE]
GP078831_V3 (15)
(plant-specificity: 50%) [OBSOLETE]
GP078836_V3 (15) GP084013_V3 (5)
(plant-specificity: 60%) [OBSOLETE]
GP084821_V3 (5) GP091066_V3 (3) GP078831_V3 (15)
(plant-specificity: 25%) [OBSOLETE]
GP079872_V3 (11) GP084013_V3 (5)
(plant-specificity: 40%) [OBSOLETE]
GP083469_V3 (6) GP091020_V3 (3) GP079872_V3 (11) GP084013_V3 (5)
(plant-specificity: 58%) [OBSOLETE]
GP084820_V3 (5)
(plant-specificity: 90%) [OBSOLETE]
GP072943_V3 (44)
(plant-specificity: 80%) [OBSOLETE]
GP074271_V3 (36)
(plant-specificity: 94%) [OBSOLETE]
GP085019_V3 (5)
(plant-specificity: 44%) [OBSOLETE]
GP077482_V3 (22) GP084820_V3 (5) GP087296_V3 (4) GP090322_V3 (3) GP087296_V3 (4)
(plant-specificity: 100%) [OBSOLETE]
GP080903_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP081766_V3 (7) GP097970_V3 (2) GP098216_V3 (2) GP098276_V3 (2) GP098492_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 237
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
1 1
4 4
1 5
1 1
2 5
3 3
5 5
2 2
3 3
2 2
3 3
2 2
1 1
2 2
21 21
156 156
17 18


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[Masking step 1 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
237 229 (97%) 229 (97%) [39; 241; 1871] ~397 51 51