Family GP000714_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 100%) [OBSOLETE]
GP000714_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:11:50)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 205
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 98%)
GP000714




Level Family ID (number of sequences)
1 GP000714_V3 (205)
2
(plant-specificity: 100%) [OBSOLETE]
GP021544_V3 (25)
(plant-specificity: 100%) [OBSOLETE]
GP022374_V3 (21)
(plant-specificity: 91%) [OBSOLETE]
GP022542_V3 (21)
(plant-specificity: 100%) [OBSOLETE]
GP022806_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP023482_V3 (13)
(plant-specificity: 100%) [OBSOLETE]
GP023855_V3 (12)
(plant-specificity: 100%) [OBSOLETE]
GP024100_V3 (11)
(plant-specificity: 100%) [OBSOLETE]
GP024348_V3 (13)
(plant-specificity: 100%) [OBSOLETE]
GP024351_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP024660_V3 (11)
(plant-specificity: 100%) [OBSOLETE]
GP025019_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP025022_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP025472_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP026111_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP027038_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP027039_V3 (5) GP030407_V3 (3) GP030434_V3 (3) GP034268_V3 (2) GP034270_V3 (2) GP034271_V3 (2) GP034519_V3 (2)
3
(plant-specificity: 100%) [OBSOLETE]
GP048726_V3 (15)
(plant-specificity: 100%) [OBSOLETE]
GP052391_V3 (6) GP057982_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP049874_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP051542_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP051545_V3 (7) GP063008_V3 (2)
(plant-specificity: 87%) [OBSOLETE]
GP049708_V3 (11)
(plant-specificity: 100%) [OBSOLETE]
GP050923_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP049391_V3 (12) GP063001_V3 (2) GP063040_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP049132_V3 (13)
(plant-specificity: 100%) [OBSOLETE]
GP051547_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP053584_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP049712_V3 (11)
(plant-specificity: 100%) [OBSOLETE]
GP049711_V3 (11) GP062995_V3 (2) GP063040_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP050441_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP049713_V3 (11) GP051545_V3 (7) GP063015_V3 (2) GP055389_V3 (4) GP063042_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP051546_V3 (7) GP055382_V3 (4) GP062995_V3 (2) GP057980_V3 (3) GP062991_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP053579_V3 (5) GP057975_V3 (3) GP058007_V3 (3) GP062992_V3 (2) GP062996_V3 (2) GP062998_V3 (2) GP063282_V3 (2)
4
(plant-specificity: 100%) [OBSOLETE]
GP079074_V3 (14)
(plant-specificity: 100%) [OBSOLETE]
GP084927_V3 (5) GP097034_V3 (2) GP090634_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP080231_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP083411_V3 (6) GP087223_V3 (4) GP087221_V3 (4) GP090630_V3 (3) GP090639_V3 (3) GP087223_V3 (4)
(plant-specificity: 100%) [OBSOLETE]
GP080916_V3 (9) GP090570_V3 (3) GP097038_V3 (2) GP097051_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP080420_V3 (10) GP097041_V3 (2) GP097088_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP082308_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP083423_V3 (6) GP090652_V3 (3) GP090664_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP084935_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP083416_V3 (6) GP090715_V3 (3) GP097214_V3 (2) GP083411_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP083415_V3 (6) GP097261_V3 (2) GP090631_V3 (3) GP097088_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP083421_V3 (6) GP097296_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP083417_V3 (6) GP090639_V3 (3) GP087221_V3 (4) GP090630_V3 (3) GP090639_V3 (3) GP097058_V3 (2) GP090677_V3 (3) GP097261_V3 (2) GP097090_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP083418_V3 (6) GP090631_V3 (3) GP090670_V3 (3) GP090631_V3 (3) GP097030_V3 (2) GP097265_V3 (2) GP097037_V3 (2) GP097239_V3 (2) GP097295_V3 (2) GP097019_V3 (2) GP097109_V3 (2) GP090630_V3 (3) GP097033_V3 (2) GP097036_V3 (2) GP097357_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 205
Species Count (w/o splice) Count (w/ splice)
205 205


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[Masking step 1 details] [Masking step 2 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
205 205 (100%) 205 (100%) [59; 279; 780] ~299 45 45