Family GP000731_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 94%) [OBSOLETE]
GP000731_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:12:06)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 192




Level Family ID (number of sequences)
1 GP000731_V3 (192)
2
(plant-specificity: 100%) [OBSOLETE]
GP017373_V3 (67)
(plant-specificity: 94%) [OBSOLETE]
GP022782_V3 (19)
(plant-specificity: 100%) [OBSOLETE]
GP023195_V3 (16)
(plant-specificity: 100%) [OBSOLETE]
GP023206_V3 (16)
(plant-specificity: 100%) [OBSOLETE]
GP023990_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP023995_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP024275_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP025770_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP026509_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP027152_V3 (5) GP027778_V3 (4) GP028527_V3 (4) GP028757_V3 (4) GP029564_V3 (3) GP029662_V3 (3) GP029741_V3 (3) GP032724_V3 (2) GP034111_V3 (2) GP035169_V3 (2) GP035454_V3 (2)
3
(plant-specificity: 100%) [OBSOLETE]
GP048078_V3 (19)
(plant-specificity: 100%) [OBSOLETE]
GP048396_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP048677_V3 (15)
(plant-specificity: 100%) [OBSOLETE]
GP049298_V3 (11)
(plant-specificity: 100%) [OBSOLETE]
GP050282_V3 (9) GP056479_V3 (3) GP057203_V3 (3)
(plant-specificity: 94%) [OBSOLETE]
GP048547_V3 (16) GP060072_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP051461_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP052551_V3 (6) GP059056_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP048574_V3 (16)
(plant-specificity: 100%) [OBSOLETE]
GP050304_V3 (9) GP049298_V3 (11)
(plant-specificity: 100%) [OBSOLETE]
GP049949_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP051935_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP052900_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP053709_V3 (5) GP054577_V3 (4) GP055508_V3 (4) GP055762_V3 (4) GP056913_V3 (3) GP057048_V3 (3) GP057177_V3 (3) GP061019_V3 (2) GP062757_V3 (2) GP064038_V3 (2) GP064365_V3 (2)
4
(plant-specificity: 100%) [OBSOLETE]
GP078784_V3 (15)
(plant-specificity: 100%) [OBSOLETE]
GP081875_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP083008_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP078426_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP079013_V3 (14) GP098720_V3 (2) GP079013_V3 (14)
(plant-specificity: 100%) [OBSOLETE]
GP081296_V3 (8) GP081875_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP080756_V3 (9) GP081875_V3 (7) GP093261_V3 (2) GP083008_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP078818_V3 (15) GP092946_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP084679_V3 (5) GP097689_V3 (2) GP087760_V3 (4) GP100313_V3 (2) GP091825_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP078639_V3 (16)
(plant-specificity: 100%) [OBSOLETE]
GP080774_V3 (9) GP079013_V3 (14) GP081296_V3 (8) GP081875_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP080333_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP082874_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP084083_V3 (5) GP091253_V3 (3) GP098281_V3 (2) GP086287_V3 (4) GP087366_V3 (4) GP087667_V3 (4) GP089291_V3 (3) GP089475_V3 (3) GP095035_V3 (2) GP094506_V3 (2) GP096694_V3 (2) GP098263_V3 (2) GP098634_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 192
Species Count (w/o splice) Count (w/ splice)
2 2
20 27
8 10
50 62
28 28
1 1
2 2
1 1
3 3
1 1
5 5
1 1
47 47
2 2


Information to display




(click on chart bars above to get species proteins)


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
192 171 (89%) 171 (89%) [53; 352; 1146] ~384 198 198