Documentation
Data sources
Genome sequences
Organism | Genomes | Sources and releases | Number of sequences |
---|---|---|---|
Oryza sativa | ORYSA_IR8_v1.0 | v1.0 (Stein et al, 2018) |
35495 |
Oryza sativa | ORYSA_Kitaake_v3.1 | v3.1 |
35594 |
Oryza sativa | ORYSA_MH63_v1.0 | v1.0 (Zhang et al, 2017) |
60123 |
Oryza sativa | ORYSA_N22_v1.0 | v1.0 (Stein et al, 2018) |
36140 |
Oryza sativa | ORYSA_Nipponbare_v7.0 | v7.0 (Goff et al, 2002) |
55986 |
Oryza sativa | ORYSA_R498_IGDB_v3.0 | v3.0 (Du et al, 2017) |
37549 |
Oryza sativa | ORYSA_ZS97_v1.0 | v1.0 (Zhang et al, 2017) |
60897 |
Oryza sativa | ORYSA | n/a | 55093 |
Arabidopsis thaliana | ARATH_Araport11 | vAraport11 (AGI, 2000) |
27655 |
Medicago truncatula | MEDTR_A17_r5.0 | v5.0 (Pecrix et al, 2018) |
44623 |
Medicago truncatula | MEDTR_Mt4.0v2 | v4.0.2 (Tang et al, 2014) |
50444 |
Medicago truncatula | MEDTR | n/a | 41406 |
Sorghum bicolor | SORBI_BTx623_v3.1.1 | v3.1.1 (McCormick RF, 2017) |
34129 |
Sorghum bicolor | SORBI_Tx430_v1.0 | v1.0 (Deschamp et al, 2018) |
36110 |
Sorghum bicolor | SORBI | n/a | 31282 |
Vitis vinifera | VITVI_12X.2 | v2.0 (Canaguier et al, 2017) |
41733 |
Vitis vinifera | VITVI_CabernetSauvignon_v1.0 | v1.0 (Minio et al, 2018) |
96331 |
Vitis vinifera | VITVI_Carmenere_v1.0 | v1.0 (Minio et al, 2019) |
73109 |
Vitis vinifera | VITVI | n/a | 44202 |
Brachypodium distachyon | BRADI_ABR2_337_v1.ABR2 | v1.ABR2 (Gordon et al, 2026) |
46637 |
Brachypodium distachyon | BRADI_ABR3_343_v1.ABR3 | v1.ABR3 (Gordon et al, 2034) |
46370 |
Brachypodium distachyon | BRADI_ABR4_364_v1.ABR4 | v1.ABR4 (Gordon et al, 2030) |
46109 |
Brachypodium distachyon | BRADI_ABR5_379_v1.ABR5 | v1.ABR5 (Gordon et al, 2046) |
46591 |
Brachypodium distachyon | BRADI_ABR6_336_v1.ABR6_r | v1.ABR6_r (Gordon et al, 2021) |
46043 |
Brachypodium distachyon | BRADI_ABR7_369_v1.ABR7 | v1.ABR7 (Gordon et al, 2020) |
46293 |
Brachypodium distachyon | BRADI_ABR8_356_v1.ABR8 | v1.ABR8 (Gordon et al, 2065) |
44257 |
Brachypodium distachyon | BRADI_ABR9_333_v1.ABR9_r | v1.ABR9_r (Gordon et al, 2029) |
35015 |
Brachypodium distachyon | BRADI_Adi_10_381_v1.Adi-10 | v1.Adi-10 (Gordon et al, 2067) |
41786 |
Brachypodium distachyon | BRADI_Adi_12_359_v1.Adi-12 | v1.Adi-12 (Gordon et al, 2055) |
45370 |
Brachypodium distachyon | BRADI_Adi_2_372_v1.Adi-2 | v1.Adi-2 (Gordon et al, 2023) |
46560 |
Brachypodium distachyon | BRADI_Arn1_355_v1.Arn1 | v1.Arn1 (Gordon et al, 2024) |
45851 |
Brachypodium distachyon | BRADI_Bd18_1_362_v1.Bd18-1 | v1.Bd18-1 (Gordon et al, 2019) |
46621 |
Brachypodium distachyon | BRADI_Bd1_1_349_v1.Bd1-1 | v1.Bd1-1 (Gordon et al, 2053) |
42227 |
Brachypodium distachyon | BRADI_Bd21_3_378_v1.Bd21-3_r | v1.Bd21-3_r (Gordon et al, 2045) |
44011 |
Brachypodium distachyon | BRADI_Bd21v2_1_283_Bd21v2 | v2.0 (Gordon et al, 2017) |
42868 |
Brachypodium distachyon | BRADI_Bd29_1_346_v1.Bd29-1 | v1.Bd29-1 (Gordon et al, 2064) |
44278 |
Brachypodium distachyon | BRADI_Bd2_3_353_v1.Bd2-3 | v1.Bd2-3 (Gordon et al, 2057) |
45459 |
Brachypodium distachyon | BRADI_Bd30_1_344_v1.Bd30-1 | v1.Bd30-1 (Gordon et al, 2048) |
42026 |
Brachypodium distachyon | BRADI_Bd3_1_328_v1.Bd3-1_r | v1.Bd3-1_r (Gordon et al, 2066) |
37234 |
Brachypodium distachyon | BRADI_BdTR10c_374_v1.BdTR10C | v1.BdTR10C (Gordon et al, 2062) |
44299 |
Brachypodium distachyon | BRADI_BdTR11a_380_v1.BdTR11A | v1.BdTR11A (Gordon et al, 2056) |
49561 |
Brachypodium distachyon | BRADI_BdTR11g_357_v1.BdTR11G | v1.BdTR11G (Gordon et al, 2035) |
46726 |
Brachypodium distachyon | BRADI_BdTR11i_363_v1.BdTR11I | v1.BdTR11I (Gordon et al, 2043) |
46207 |
Brachypodium distachyon | BRADI_BdTR12c_352_v1.BdTR12c | v1.BdTR12c (Gordon et al, 2058) |
44583 |
Brachypodium distachyon | BRADI_BdTR13a_334_v1.BdTR13a | v1.BdTR13a (Gordon et al, 2025) |
47194 |
Brachypodium distachyon | BRADI_BdTR13c_365_v1.BdTR13C | v1.BdTR13C (Gordon et al, 2059) |
45083 |
Brachypodium distachyon | BRADI_BdTR1i_345_v1.BdTR1i | v1.BdTR1i (Gordon et al, 2027) |
46722 |
Brachypodium distachyon | BRADI_BdTR2b_376_v1.BdTR2B | v1.BdTR2B (Gordon et al, 2050) |
45974 |
Brachypodium distachyon | BRADI_BdTR2g_367_v1.BdTR2G | v1.BdTR2G (Gordon et al, 2060) |
45130 |
Brachypodium distachyon | BRADI_BdTR3c_354_v1.BdTR3C | v1.BdTR3C (Gordon et al, 2018) |
43389 |
Brachypodium distachyon | BRADI_BdTR5i_370_v1.BdTR5I | v1.BdTR5I (Gordon et al, 2063) |
44350 |
Brachypodium distachyon | BRADI_BdTR7a_329_v1.BdTR7a | v1.BdTR7a (Gordon et al, 2047) |
45440 |
Brachypodium distachyon | BRADI_BdTR8i_348_v1.BdTR8i | v1.BdTR8i (Gordon et al, 2037) |
44427 |
Brachypodium distachyon | BRADI_BdTR9k_358_v1.BdTR9K | v1.BdTR9K (Gordon et al, 2061) |
44670 |
Brachypodium distachyon | BRADI_Bis_1_338_v1.Bis-1 | v1.Bis-1 (Gordon et al, 2044) |
45734 |
Brachypodium distachyon | BRADI_Foz1_366_v1.Foz1 | v1.Foz1 (Gordon et al, 2042) |
46457 |
Brachypodium distachyon | BRADI_Gaz_8_339_v1.Gaz-8 | v1.Gaz-8 (Gordon et al, 2069) |
36875 |
Brachypodium distachyon | BRADI_Jer1_375_v1.Jer1 | v1.Jer1 (Gordon et al, 2049) |
46047 |
Brachypodium distachyon | BRADI_Kah_1_351_v1.Kah-1 | v1.Kah-1 (Gordon et al, 2068) |
44606 |
Brachypodium distachyon | BRADI_Kah_5_342_v1.Kah-5 | v1.Kah-5 (Gordon et al, 2036) |
46744 |
Brachypodium distachyon | BRADI_Koz_1_330_v1.Koz-1 | v1.Koz-1 (Gordon et al, 2028) |
46872 |
Brachypodium distachyon | BRADI_Koz_3_368_v1.Koz-3 | v1.Koz-3 (Gordon et al, 2051) |
41884 |
Brachypodium distachyon | BRADI_Luc1_347_v1.Luc1 | v1.Luc1 (Gordon et al, 2022) |
46198 |
Brachypodium distachyon | BRADI_Mig3_377_v1.Mig3 | v1.Mig3 (Gordon et al, 2039) |
46077 |
Brachypodium distachyon | BRADI_Mon3_350_v1.Mon3 | v1.Mon3 (Gordon et al, 2033) |
44757 |
Brachypodium distachyon | BRADI_Mur1_373_v1.Mur1 | v1.Mur1 (Gordon et al, 2054) |
45912 |
Brachypodium distachyon | BRADI_Per1_326_v1.Per1 | v1.Per1 (Gordon et al, 2031) |
46229 |
Brachypodium distachyon | BRADI_Ron2_360_v1.RON2 | v1.RON2 (Gordon et al, 2032) |
46068 |
Brachypodium distachyon | BRADI_S8iiC_340_v1.S8iiC | v1.S8iiC (Gordon et al, 2040) |
46088 |
Brachypodium distachyon | BRADI_Sig2_371_v1.Sig2 | v1.Sig2 (Gordon et al, 2041) |
46526 |
Brachypodium distachyon | BRADI_Tek_2_341_v1.Tek-2 | v1.Tek-2 (Gordon et al, 2052) |
44903 |
Brachypodium distachyon | BRADI_Tek_4_332_v1.Tek-4 | v1.Tek-4 (Gordon et al, 2070) |
43220 |
Brachypodium distachyon | BRADI_Uni2_327_v1.Uni2 | v1.Uni2 (Gordon et al, 2038) |
45793 |
Brachypodium distachyon | BRADI | n/a | 61571 |
Musa balbisiana | MUSBA_Mba1.1 | v1.1 (Wang et al, 2019) |
33021 |
Musa acuminata | MUSAC_Macba2 | v2.0 (Rouard et al, 2018) |
32692 |
Musa acuminata | MUSAC_Macbu1 | v1.0 (Rouard et al, 2018) |
45069 |
Musa acuminata | MUSAC_Macma2 | v2.0 (Martin et al, 2016) |
35276 |
Musa acuminata | MUSAC_Macze1 | v1.0 (Rouard et al, 2018) |
44702 |
Musa acuminata | MUSAC | n/a | 46270 |
Theobroma cacao | THECC_Criollo_v2.0 | v2.0 (Argout et al, 2018) |
21330 |
Theobroma cacao | THECC_Matina1_6_v1.1 | v1.1 (Motamayor et al, 2013) |
44607 |
Theobroma cacao | THECC | n/a | 25494 |
Manihot esculenta | MANES_AM560_2_v6.1 | v6.1 (Bredeson et al, 2016) |
33033 |
Malus domestica | MALDO_Borkh_v3.0.a1 | v3.0.a1 (Velasco et al, 2010; Li et al, 2016) |
95232 |
Malus domestica | MALDO_GDDH13_v1.1 | v1.1 (Daccord et al, 2017) |
45116 |
Malus domestica | MALDO_HFTH1 | vHFTH1 (Zhang et al, 2019) |
44677 |
Malus domestica | MALDO | n/a | 55576 |
Cucumis sativus | CUCSA_ASM407_v2.0 | v2.0 (Huang et al, 2009) |
23780 |
Cucumis sativus | CUCSA_Gy14_v2.0 | v2.0 (unpublished) |
22324 |
Cucumis sativus | CUCSA_PI183967 | vPI183967 (Qi et al, 2013) |
22935 |
Cucumis sativus | CUCSA | n/a | 23556 |
Cajanus cajan | CAJCA_Asha_v1.0 | v1.0 (Varshney et al, 2012) |
40071 |
Hordeum vulgare | HORVU_IBSC_v2.0 | v2.0 (IBGC, 2012) |
37705 |
Phaseolus vulgaris | PHAVU_v2.0 | v2.0 (Schmutz et al. 2014) |
27433 |
Citrus sinensis | CITSI_v2.0 | v2.0 (Xu et al, 2013) |
29406 |
Solanum tuberosum | SOLTU_PGSC_v4.03 | v4.03 (PGSC) |
39031 |
Amborella trichopoda | AMBTC_v1.0 | v1.0 (Albert et al, 2013) |
26846 |
Elaeis guineensis | ELAGV_RefSeq_v1.0 | v1.0 (Singh et al, 2013) |
41887 |
Cicer arietinum | CICAR_CDC_Frontier_kabuli | vKabuli (Varshney et al, 2013) |
28269 |
Cicer arietinum | CICAR_ICC_4958_desi | vDesi (Parween et al, 2015) |
30257 |
Cicer arietinum | CICAR | n/a | 25097 |
Coffea canephora | COFCA_v1.0 | v1.0 (Denoeud et al, 2014) |
25574 |
Citrus maxima | CITMA_v1.0 | v1.0 (Wang et al, 2017) |
30123 |
Cucumis melo | CUCME_DHL92_v3.6.1 | v3.6.1 (Garcia-Mas et al. 2012) |
29980 |
Coffea arabica | COFAR_RB_v1.0 | v1.0 (unpublished) |
78311 |
Brassica napus | BRANA_Darmor_v8.1 | v8.1 (Bayer et al. (2017)) |
80382 |
Brassica napus | BRANA_Tapidor_v6.3 | v6.3 (Bayer et al. (2017)) |
70162 |
Brassica napus | BRANA_v5.0 | v5.0 (Chalhoub et al. 2014. Science) |
101040 |
Brassica napus | BRANA | n/a | 78083 |
Daucus carota | DAUCA_JGI_v2.0 | v2.0 (Iorizzo et al, 2016) |
32118 |
Ipomoea trifida | IPOTF_NSP306 | vNSP306 (Wu et al, 2018) |
32301 |
Ipomoea trifida | IPOTF_Y22 | vY22 (Li et al, 2019) |
30227 |
Ipomoea trifida | IPOTF | n/a | 31420 |
Fragaria vesca | FRAVE_v4.0a1 | v4.0a1 (Shulaev et al, 2011) |
28588 |
Cocos nucifera | COCNU_C3B02_v2.0 | v2.0 |
52931 |
Cocos nucifera | COCNU_CATD | vCatigan Green Dwarf (Lantican et al, 2019) |
34953 |
Cocos nucifera | COCNU | n/a | 35995 |
Capsicum annuum | CAPAN_CM334_v2.0 | v2.0 (Kim et al, 2014) |
35884 |
Capsicum annuum | CAPAN_Glabriusculum_Chiltepin_v2.0 | v2.0 (Qin et al, 2014) |
34476 |
Capsicum annuum | CAPAN_Zunla_1_v2.0 | v2.0 (Qin et al, 2014) |
35336 |
Capsicum annuum | CAPAN | n/a | 42020 |
Phoenix dactylifera | PHODC_v3.0 | v3.0 (Al-Mssallem et al, 2013) |
40634 |
Oryza glaberrima | ORYGL_v1.0 | v1.0 (Wang et al, 2014 ;stein et al, 2018) |
33164 |
Olea europaea | OLEEU_v1.0 | v1.0 (Unver et al, 2017) |
50684 |
Ipomoea triloba | IPOTR_NSP323 | vNSP323 (Wu et al, 2018) |
31426 |
Beta vulgaris | BETVU_RefBeet_v1.2 | v1.2 (Minoche et al. 2015) |
29088 |
Glycine max | SOYBN_Wm82_a2_v1.0 | v1.0 (Schmutz et al, 2010) |
54175 |
Glycine max | SOYBN_ZH13 | vZH13 (Shen et al, 2018) |
52130 |
Glycine max | SOYBN | n/a | 45272 |
Solanum lycopersicum | SOLLC_ITAG3.2 | v3.2 |
34727 |
Helianthus annuus | HELAN_XRQ_v1.2 | v1.2 (Badouin et al, 2017) |
52243 |
Chenopodium quinoa | CHEQI_JGI_v1.0 | v1.0 (Jarvis et al, 2017) |
44776 |
Citrus medica | CITME_v1.0 | v1.0 (Wang et al, 2017) |
46851 |
Brassica oleracea | BRAOL_A2_v1.0 | v1.0 (Liu et al. (2014)) |
35400 |
Brassica oleracea | BRAOL_HDEM | vHDEM (Belsner et al, 2018) |
61279 |
Brassica oleracea | BRAOL_TO1000 | vTO1000 (Parkin et al. (2014) ) |
56687 |
Brassica oleracea | BRAOL | n/a | 61301 |
Triticum turgidum | TRITU_Svevo_v2.0 | v2.0 (Maccaferri et al, 2019) |
67182 |
Triticum turgidum | TRITU_Zavitan_v1.1 | v1.1 (IWGSC) |
107891 |
Triticum turgidum | TRITU | n/a | 54802 |
Zea mays | MAIZE_B73_v4.0 | v4.0 (Schnable et al, 2009?) |
39591 |
Zea mays | MAIZE_CML247_v1.0 | v1.0 (Lu et al, 2015) |
36509 |
Zea mays | MAIZE_Mo17_v1.0 | v1.0 (Yang et al, 2017) |
40003 |
Zea mays | MAIZE_PH207_v1.0 | v1.0 (Hirsch et al, 2016) |
40557 |
Zea mays | MAIZE | n/a | 45785 |
Saccharum spontaneum | SACSP_AP85_441_v1.0 | v1.0 (Zhang et al, 2018) |
83826 |
Brassica rapa subsp. rapa | BRARR_Z1 | vZ1 (Belsner et al, 2018) |
46721 |
Brassica rapa subsp. rapa | BRARR_v3.0 | v3.0 (Wang et al. (2011); Zhang et al,2018) |
46250 |
Brassica rapa subsp. rapa | BRARR | n/a | 50270 |
Dioscorea rotundata | DIORT_TDr96_F1_v1.0 | v1.0 (Tamiru et al, 2017) |
26198 |
Organism | Example of sequence identifiers |
---|---|
Oryza sativa | OsIR8_01T0082700, OsKitaake01g090000.1, OsMH_01T0048700, A2J10_01T0097400, LOC_Os01g07610.1, OsR498G0100152900.01.T03, OsZS_01T0055100, orysa_pan_p000016 |
Arabidopsis thaliana | AT1G09245.1 |
Medicago truncatula | MtrunA17_Chr1g0211551, Medtr0010s0050.1, medtr_pan_p000261 |
Sorghum bicolor | Sobic.001G002300.1, 3381.casb001g007560.635.1, sorbi_pan_p000991 |
Vitis vinifera | Vitvi07g02868.t01, VvCabSauv08_H0000F_021.ver1.0.g001730.m02, VvCarFPS02VCR702_v1_Hc0001F_005.ver1_0.g416090.m01, vitvi_pan_p000282 |
Brachypodium distachyon | Brdisv1ABR21029766m_1, Brdisv1ABR31029220m_1, Brdisv1ABR41026924m_1, Brdisv1ABR51025695m_1, Brdisv1ABR6_r1027265m_1, Brdisv1ABR71030193m_1, Brdisv1ABR81038634m_1, Brdisv1ABR9_r1019819m_1, Brdisv1Adi-101017394m_1, Brdisv1Adi-121022618m_1, Brdisv1Adi-21029616m_1, Brdisv1Arn11029158m_1, Brdisv1Bd18-11030959m_1, Brdisv1Bd1-11025025m_1, Brdisv1Bd21-3_r1022808m_1, Bradi2g32300.2_1, Brdisv1Bd29-11021930m_1, Brdisv1Bd2-31022169m_1, Brdisv1Bd30-11029799m_1, Brdisv1Bd3-1_r1024391m_1, Brdisv1BdTR10C1025634m_1, Brdisv1BdTR11A1021908m_1, Brdisv1BdTR11G1024140m_1, Brdisv1BdTR11I1026069m_1, Brdisv1BdTR12c1024395m_1, Brdisv1BdTR13a1030070m_1, Brdisv1BdTR13C1026144m_1, Brdisv1BdTR1i1025168m_1, Brdisv1BdTR2B1022768m_1, Brdisv1BdTR2G1023532m_1, Brdisv1BdTR3C1025209m_1, Brdisv1BdTR5I1023921m_1, Brdisv1BdTR7a1029692m_1, Brdisv1BdTR8i1023431m_1, Brdisv1BdTR9K1024274m_1, Brdisv1Bis-11023779m_1, Brdisv1Foz11030483m_1, Brdisv1Gaz-81014239m_1, Brdisv1Jer11027759m_1, Brdisv1Kah-11023704m_1, Brdisv1Kah-51027011m_1, Brdisv1Koz-11027438m_1, Brdisv1Koz-31020911m_1, Brdisv1Luc11026946m_1, Brdisv1Mig31029511m_1, Brdisv1Mon31025620m_1, Brdisv1Mur11022815m_1, Brdisv1Per11024694m_1, Brdisv1RON21025570m_1, Brdisv1S8iiC1028683m_1, Brdisv1Sig21026365m_1, Brdisv1Tek-21022501m_1, Brdisv1Tek-41014715m_1, Brdisv1Uni21025333m_1, bradi_pan_p000214 |
Musa balbisiana | Mba04_g36740.1 |
Musa acuminata | Maban_Contig101_t002830, Mabur_Contig10018_t000010, Ma00_t03380.1, Mazeb_scaffold1020_t000040, musac_pan_p000391 |
Theobroma cacao | Tc01v2_t003010.1, Thecc1EG039841t1, thecc_pan_p000279 |
Manihot esculenta | Manes.01G091600.1 |
Malus domestica | MDP0000183277, MD00G1009500, HF05616-RA, maldo_pan_p000466 |
Cucumis sativus | KGN43480, CsGy1G003100.1, evm.model.Chr1.1316, cucsa_pan_p000636 |
Cajanus cajan | cajca.ICPL87119.gnm1.ann1.C.cajan_00060.1 |
Hordeum vulgare | HORVU0Hr1G014040.1 |
Phaseolus vulgaris | phavu.G19833.gnm2.ann1.Phvul.001G003200.1 |
Citrus sinensis | Cs1g10600.2 |
Solanum tuberosum | PGSC0003DMP400056884 |
Amborella trichopoda | evm_27.model.AmTr_v1.0_scaffold00002.669 |
Elaeis guineensis | XP_010904860.1 |
Cicer arietinum | cicar.CDCFrontier.gnm1.ann1.Ca_00110.1, cicar.ICC4958.gnm2.ann1.Ca_00424.1, cicar_pan_p000869 |
Coffea canephora | Cc01_g01640 |
Citrus maxima | Cg1g002730.1 |
Cucumis melo | MELO3C000273.2.1 |
Coffea arabica | Ca_10_294.1 |
Brassica napus | BnaA01g00170.1D2, BnaA01g02120.1T, GSBRNA2T00000314001, brana_pan_p000376 |
Daucus carota | DCAR_001131 |
Ipomoea trifida | itf00g08060.t1, Itr.xfSc0000220.7, ipotf_pan_p000811 |
Fragaria vesca | FvH4_1g06490.1 |
Cocos nucifera | COCNU_HT001RO02_14PF03920.2, Cnu_30870-RA, cocnu_pan_p000933 |
Capsicum annuum | CA.PGAv.1.6.scaffold1013.38, Capang03g001326, Capana00g000613, capan_pan_p000485 |
Phoenix dactylifera | XP_008776083.1 |
Oryza glaberrima | ORGLA01G0014400.1 |
Olea europaea | Oeu000100.1 |
Ipomoea triloba | itb01g01900.t1 |
Beta vulgaris | Bv1_004010_pkxn.t1 |
Glycine max | Glyma01g07343.1, SoyZH13_01G041700.m1, soybn_pan_p000754 |
Solanum lycopersicum | Solyc00g025530.1.1 |
Helianthus annuus | HanXRQChr00c0746g0577131 |
Chenopodium quinoa | AUR62000170-RA |
Citrus medica | Cm003760.1 |
Brassica oleracea | Bol005028, BolC1p00502H, NC_027748.1_cds_XP_013585873.1_85, braol_pan_p000431 |
Triticum turgidum | TRIDC1Av2G009990.1, TraesCS1A02G019300.1, tritu_pan_p000790 |
Zea mays | Zm00001d002047, Zm00006a000487, ZmMO1701t000651, Zm00008a027152_T01, maize_pan_p000562 |
Saccharum spontaneum | Sspon.01G0006940-1A |
Brassica rapa subsp. rapa | BraA05t21300Z, BraA01g004260.3C, brarr_pan_p000363 |
Dioscorea rotundata | Dr00107 |
Data associated to genomes
Protein domain: Each sequence was analysed using InterProScan to identify InterPro domain (release ).
UniProt: Correspondance between UniProtKB-Swissprot ( last updated: January 2020) was made based on the ordered locus when available (in 'Gene names' section). Otherwise, mapping was done by using blast with UniProtKB-Swissprot against a specific whole genome. We transfered UniProtKB-Swissprot for the first hit with an identity score > 90%.
Gene Ontology (GO): GO terms were obtained from the interpro (InterPro to GO mapping version: 2019/09/07 14:18:45) and UniProt (UniProt to GO mapping version: n/a).
Pubmed: Gene families were mapped by selected pubmed id referenced in UniProt entries. GreenPhyl Curators can also add additional publications manually.