Family GP000810


Family ID GP000810  add to my list RDF
Family name BBR-BPC transcription factor family   suggest a name
Synonym(s) GAGA binding-like family
Cross-reference(s) PMID:
The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
12795701 PMID:
BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.
15722463 PMID:
Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA.
12177492
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
BBR-BPC transcription factor family (plant-specificity: 100%)
GP000810 (270)
2 GP016044 (270)
3 GP041943 (270)
4 GP071662 (150) , GP071241 (120)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 270
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
4 4
4 4
11 11
9 9
8 8
7 7
4 7
3 4
3 3
3 3
4 9
5 5
6 6
6 6
6 6
5 5
7 17
3 3
6 6
8 28
5 5
16 33
5 5
7 7
4 10
8 8
4 4
5 5
3 3
5 9
10 22
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
GAGA-binding transcriptional activator
IPR010409
GAGA-binding transcriptional activator Family 89 (240) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR010409


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
270 192 (71%) 184 (68%) [84; 293; 704] ~295 1384 177


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
270 184 (68%) 1.32543 1.68474 0.668318



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