Family GP001596


Family ID GP001596  add to my list RDF
Family name Fasciclin-like arabinogalactan family   suggest a name
Cross-reference(s) PMID:
The fasciclin-like arabinogalactan proteins of Arabidopsis. A multigene family of putative cell adhesion molecules.
14645732
Curation status ?
Found in Embryophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Fasciclin-like arabinogalactan family (plant-specificity: 100%)
GP001596 (271)
2
(plant-specificity: 100%)
GP022068 (59) ,
(plant-specificity: 100%)
GP020279 (51) ,
(plant-specificity: 100%)
GP021655 (50) ,
(plant-specificity: 100%)
GP023404 (27) ,
(plant-specificity: 100%)
GP023264 (25) ,
(plant-specificity: 100%)
GP023716 (26) ,
(plant-specificity: 100%)
GP111076 (10) ,
(plant-specificity: 100%)
GP025957 (7) ,
(plant-specificity: 100%)
GP025228 (8) , GP114288 (4)
3
(plant-specificity: 100%)
GP050319 (59) ,
(plant-specificity: 100%)
GP046752 (50) ,
(plant-specificity: 100%)
GP045257 (47) ,
(plant-specificity: 100%)
GP048822 (27) ,
(plant-specificity: 100%)
GP048632 (25) ,
(plant-specificity: 100%)
GP049219 (22) ,
(plant-specificity: 100%)
GP051222 (8) ,
(plant-specificity: 100%)
GP052200 (7) , GP123497 (6) , GP125795 (4) , GP126090 (4) , GP126344 (4) , GP128097 (3) , GP129659 (3)
4
(plant-specificity: 100%)
GP078989 (59) ,
(plant-specificity: 100%)
GP079453 (50) , GP074876 (47) ,
(plant-specificity: 100%)
GP078712 (25) ,
(plant-specificity: 100%)
GP078947 (22) ,
(plant-specificity: 100%)
GP079440 (15) ,
(plant-specificity: 100%)
GP136020 (8) ,
(plant-specificity: 100%)
GP081941 (8) ,
(plant-specificity: 100%)
GP083207 (7) , GP137880 (6) ,
(plant-specificity: 100%)
GP139129 (5) , GP141490 (4) , GP141886 (4) , GP144120 (3) , GP144984 (3) , GP146589 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 271
Species Count (w/o splice) Count (w/ splice)
6 11
1 1
15 15
8 8
1 1
2 2
11 11
2 2
4 5
3 3
1 1
2 2
4 4
1 1
3 3
10 10
8 8
4 4
8 8
10 10
10 10
6 6
12 12
13 13
9 9
11 11
6 6
23 23
7 7
17 17
13 13
11 12
12 12
10 10


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
FAS1 domain
IPR000782
FAS1 domain Domain 76 (205) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000782


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
271 264 (97%) 244 (90%) [58; 283; 841] ~290 1768 135


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
271 244 (90%) 2.24569 2.0653 0.536572



for (default: all):
Species



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