Family GP004709


Family ID GP004709  add to my list RDF
Family name Ribosomal protein L18/L5 family   suggest a name
Cross-reference(s) PMID:
Atomic structures at last: the ribosome in 2000.
11297922
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein L18/L5 family (plant-specificity: 50%)
GP004709 (272)
2 GP017097 (142) ,
(plant-specificity: 9%)
GP019669 (66) ,
(plant-specificity: 9%)
GP022280 (47) ,
(plant-specificity: 100%)
GP111672 (8) ,
(plant-specificity: 100%)
GP029188 (7)
3
(plant-specificity: 70%)
GP047299 (142) , GP044571 (66) ,
(plant-specificity: 9%)
GP047471 (47) ,
(plant-specificity: 100%)
GP122274 (8) ,
(plant-specificity: 100%)
GP068301 (7)
4
(plant-specificity: 80%)
GP077539 (70) , GP075014 (66) ,
(plant-specificity: 9%)
GP077325 (47) ,
(plant-specificity: 30%)
GP132634 (38) ,
(plant-specificity: 98%)
GP077702 (34) ,
(plant-specificity: 100%)
GP136240 (8) ,
(plant-specificity: 100%)
GP103137 (7)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 272
Species Count (w/o splice) Count (w/ splice)
3 4
5 5
6 6
5 5
7 7
6 6
6 6
6 6
7 14
6 8
5 5
6 6
7 11
6 7
5 5
10 10
9 9
5 5
5 6
5 5
6 6
14 20
12 12
10 17
5 5
7 7
5 5
6 6
9 9
9 9
6 6
6 9
8 18
7 7


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L18/L5
IPR005484
Ribosomal protein L18/L5 Family 82 (222) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005484


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
272 230 (85%) 225 (83%) [57; 150; 706] ~179 1425 83


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
272 225 (83%) 2.05421 1.77863 1.03214



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