Family GP000972


Family ID GP000972  add to my list RDF
Family name Rab GDI protein Family   suggest a name
Family Ontology
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molecular_function
Rab GDP-dissociation inhibitor activity
GO:0005093 (57%) - Rab GDP-dissociation inhibitor activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Rab GDI protein Family (plant-specificity: 9%)
GP000972 (266)
2 GP016449 (181) , GP018398 (84) ,
(plant-specificity: 100%)
GP028382 (5)
3 GP041071 (181) , GP043117 (84) ,
(plant-specificity: 100%)
GP053563 (5)
4 GP070468 (181) , GP072617 (84) ,
(plant-specificity: 100%)
GP090599 (5)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 266
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
8 8
5 6
2 2
12 12
3 3
9 9
7 7
13 13
6 6
5 6
7 10
4 4
7 7
12 14
5 6
5 5
2 2
4 4
5 5
4 5
3 3
15 15
5 20
4 4
9 13
4 4
10 10
3 4
18 18
2 2
6 7
3 3
6 6
11 14
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Yeast Mrs6p protein
IPR000632
Yeast Mrs6p protein Family 1 (1) Yes
Rab GDI protein
IPR000806
Rab GDI protein Family 57 (151) Yes
Rab escort (choroideraemia) protein
IPR001738
Rab escort (choroideraemia) protein Family 1 (1) Yes
Rab protein geranylgeranyltransferase component A, eukaryota
IPR016664
Rab protein geranylgeranyltransferase component A, eukaryota Family 17 (46) Yes
GDP dissociation inhibitor
IPR018203
GDP dissociation inhibitor Family 91 (242) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR018203 IPR000806


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
266 233 (88%) 185 (70%) [34; 445; 1862] ~410 3930 345