Family GP000113


Family ID GP000113  add to my list RDF
Family name Peptidyl-prolyl cis-trans isomerase cyclophilin-type family   suggest a name
Synonym(s) Cyclophilin family
Cross-reference(s) PMID:
Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
9426607 PMID:
Immunophilins and parvulins. Superfamily of peptidyl prolyl isomerases in Arabidopsis.
15047905 PMID:
The Arabidopsis cyclophilin gene family.
15051864
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Peptidyl-prolyl cis-trans isomerase cyclophilin-type family (plant-specificity: 30%)
GP000113 (1614)
2 GP015174 (1241) , GP018483 (111) , GP019077 (93) ,
(plant-specificity: 14%)
GP020591 (62) , GP020504 (58) , GP021679 (41) , GP111641 (6)
3 GP039873 (931) , GP043196 (111) , GP042141 (170) , GP043885 (93) ,
(plant-specificity: 9%)
GP118950 (71) , GP044362 (65) ,
(plant-specificity: 14%)
GP045598 (62) , GP045502 (58) , GP046778 (41) , GP123566 (6)
4 GP069414 (903) , GP071568 (170) , GP072702 (111) , GP073387 (93) ,
(plant-specificity: 9%)
GP132386 (71) , GP074319 (65) , GP075243 (62) , GP075134 (58) , GP076551 (41) ,
(plant-specificity: 100%)
GP132881 (26) , GP137991 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1614
Species Count (w/o splice) Count (w/ splice)
4 4
31 31
179 179
39 42
23 23
54 54
25 25
29 29
22 22
39 39
29 29
26 41
29 47
27 27
29 29
42 79
33 37
27 27
28 28
36 36
24 24
29 43
32 32
52 52
35 105
22 22
46 107
25 25
38 38
21 43
67 67
29 29
36 36
23 23
28 30
56 78
32 32


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Cyclophilin-type peptidyl-prolyl cis-trans isomerase
IPR024936
Cyclophilin-type peptidyl-prolyl cis-trans isomerase Family 23 (373) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain
IPR002130
Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain Domain 84 (1362) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR002130


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Species
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