Family GP001280


Family ID GP001280  add to my list RDF
Family name Phospholipase C family   suggest a name
Synonym(s) Phosphoesterase
Cross-reference(s) PMID:
A novel class of microbial phosphocholine-specific phospholipases C.
12410824
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Phospholipase C family
GP001280 (248)
2 GP016343 (248)
3 GP040968 (247)
4 GP070376 (247)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 248
Species Count (w/o splice) Count (w/ splice)
5 9
2 2
28 28
4 4
7 7
7 7
10 10
5 5
5 5
4 4
5 5
5 5
5 5
5 5
5 5
3 3
3 3
7 7
6 6
5 5
10 10
6 14
5 5
7 11
5 5
6 6
5 6
11 11
6 6
9 9
3 3
5 5
10 16
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Phosphoesterase
IPR007312
Phosphoesterase Domain 89 (221) No
Alkaline-phosphatase-like, core domain
IPR017850
Alkaline-phosphatase-like, core domain Domain 52 (129) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR017850 IPR007312


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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
248 225 (91%) 174 (70%) [70; 510; 1118] ~428 2133 456