Family GP004964


Family ID GP004964  add to my list RDF
Family name Mitochondrial transcription termination factor-related family   suggest a name
Synonym(s) MTERF transcription factor
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Mitochondrial transcription termination factor-related family (plant-specificity: 19%)
GP004964 (1578)
2 GP015241 (863) , GP015916 (443) , GP017896 (122) ,
(plant-specificity: 9%)
GP109260 (58) ,
(plant-specificity: 85%)
GP022744 (38) , GP023391 (25) ,
(plant-specificity: 58%)
GP109881 (21)
3 GP040005 (769) , GP040982 (142) , GP118808 (110) , GP044401 (82) ,
(plant-specificity: 30%)
GP119011 (68) ,
(plant-specificity: 9%)
GP045117 (58) , GP046875 (51) ,
(plant-specificity: 9%)
GP047449 (50) ,
(plant-specificity: 19%)
GP047266 (44) , GP047448 (42) ,
(plant-specificity: 85%)
GP048027 (37) ,
(plant-specificity: 100%)
GP048146 (37) , GP048801 (25) ,
(plant-specificity: 46%)
GP048985 (25) ,
(plant-specificity: 58%)
GP119737 (21) , GP128515 (3)
4 GP069659 (429) ,
(plant-specificity: 65%)
GP132245 (175) , GP070734 (144) , GP132277 (121) , GP071968 (107) , GP073791 (82) ,
(plant-specificity: 30%)
GP132413 (65) , GP074963 (58) , GP076657 (51) ,
(plant-specificity: 9%)
GP077101 (50) ,
(plant-specificity: 19%)
GP077100 (44) , GP077291 (42) ,
(plant-specificity: 85%)
GP077956 (37) , GP078126 (37) , GP078523 (25) ,
(plant-specificity: 46%)
GP079138 (25) ,
(plant-specificity: 19%)
GP133100 (21) ,
(plant-specificity: 58%)
GP133116 (21) ,
(plant-specificity: 37%)
GP136130 (8) ,
(plant-specificity: 77%)
GP136177 (8) , GP142293 (4) , GP144827 (3) , GP144834 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1578
Species Count (w/o splice) Count (w/ splice)
2 2
8 8
4 4
15 17
12 12
137 137
52 52
35 35
78 78
52 52
38 38
38 45
40 42
43 43
69 69
32 42
33 33
25 25
35 35
29 29
24 24
34 39
27 27
44 44
44 54
33 33
60 78
32 32
47 47
50 51
51 51
47 47
63 63
53 53
33 37
57 68
32 32


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Mitochodrial transcription termination factor-related
IPR003690
Mitochodrial transcription termination factor-related Family 90 (1421) No

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003690


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Species
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