Family GP001235


Family ID GP001235  add to my list RDF
Family name Serine O-acetyltransferase Family   suggest a name
Cross-reference(s) PMID:
Molecular basis of cysteine biosynthesis in plants: structural and functional analysis of o-acetylserine sulfhydrylase from Arabidopsis thaliana.
16166087 PMID:
The serine acetyltransferase gene family in Arabidopsis thaliana and the regulation of its expression by cadmium.
12650624 PMID:
Cysteine biosynthesis in plants: isolation and functional identification of a cDNA encoding a serine acetyltransferase from Arabidopsis thaliana.
7821427 PMID:
Cysteine biosynthesis in higher plants: a new member of the Arabidopsis thaliana serine acetyltransferase small gene-family obtained by functional complementation of an Escherichia coli cysteine auxotroph.
9048879
Comment
Family Ontology
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molecular_function
serine O-acetyltransferase activity
GO:0009001 (77%) - serine O-acetyltransferase activity
biological_process
cysteine biosynthetic process from serine
GO:0006535 (77%) - cysteine biosynthetic process from serine
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Serine O-acetyltransferase Family
GP001235 (254)
2
Serine O-acetyltransferase family
GP016260 (249) , GP115711 (4)
3 GP040891 (240) , GP121811 (9) , GP125758 (4)
4 GP070298 (240) , GP135627 (9) , GP140907 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 254
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
36 36
6 8
3 3
13 13
3 3
6 6
6 6
16 16
4 4
6 7
4 7
3 3
4 4
4 6
4 4
4 4
4 4
4 4
4 4
5 5
3 3
2 2
4 8
4 4
6 12
4 4
6 6
3 7
12 12
6 6
5 5
4 4
6 7
13 16
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Serine O-acetyltransferase
IPR005881
Serine O-acetyltransferase Family 52 (131) Yes
Phosphonate metabolim protein, transferase hexapeptide repeat family
IPR017694
Phosphonate metabolim protein, transferase hexapeptide repeat family Family 1 (1) Yes
Protein of unknown function DUF3126
IPR021473
Protein of unknown function DUF3126 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Bacterial transferase hexapeptide repeat
IPR001451
Bacterial transferase hexapeptide repeat Repeat 78 (197) No
Serine acetyltransferase, N-terminal
IPR010493
Serine acetyltransferase, N-terminal Domain 77 (196) No
Trimeric LpxA-like
IPR011004
Trimeric LpxA-like Domain 87 (222) No
Hexapeptide transferase, conserved site
IPR018357
Hexapeptide transferase, conserved site Conserved_site 67 (170) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011004 IPR001451 IPR018357 IPR010493 IPR005881


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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
254 227 (89%) 211 (83%) [70; 311; 849] ~301 1642 236


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
254 211 (83%) 4.90162 4.64114 0.62998



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