Family GP000099


Family ID GP000099  add to my list RDF
Family name Xyloglucan   suggest a name
Cross-reference(s) PMID:
The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature.
12514239 PMID:
A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis.
11673616 PMID:
The Arabidopsis XET-related gene family: environmental and hormonal regulation of expression.
8696366
Family Ontology
Close Hide
molecular_function
xyloglucan:xyloglucosyl transferase activity
GO:0016762 (79%) - xyloglucan:xyloglucosyl transferase activity
biological_process
cellular glucan metabolic process
GO:0006073 (79%) - cellular glucan metabolic process
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Xyloglucan (plant-specificity: 9%)
GP000099 (1552)
2 GP015114 (1542) , GP026771 (5) , GP117641 (3)
3 GP039829 (1539) , GP063751 (3) , GP057204 (3) , GP130858 (3)
4 GP069352 (1316) , GP070141 (204) ,
(plant-specificity: 14%)
GP133453 (17) , GP097883 (3) , GP089701 (3) , GP148007 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1552
Species Count (w/o splice) Count (w/ splice)
36 47
22 22
123 123
35 35
55 55
54 54
50 50
31 31
31 40
32 33
30 30
38 38
36 65
37 37
35 35
37 37
38 38
37 37
33 36
24 24
39 39
41 73
36 36
43 58
54 54
42 42
32 34
56 56
38 38
58 62
37 37
33 34
81 87
35 35


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Beta-glucanase
IPR008264
Beta-glucanase Family 23 (362) Yes
Xyloglucan endotransglucosylase/hydrolase
IPR016455
Xyloglucan endotransglucosylase/hydrolase Family 64 (998) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Glycoside hydrolase, family 16
IPR000757
Glycoside hydrolase, family 16 Domain 93 (1444) No
Concanavalin A-like lectin/glucanases superfamily
IPR008985
Concanavalin A-like lectin/glucanases superfamily Domain 95 (1470) No
Xyloglucan endo-transglycosylase, C-terminal
IPR010713
Xyloglucan endo-transglycosylase, C-terminal Domain 79 (1232) No
Concanavalin A-like lectin/glucanase, subgroup
IPR013320
Concanavalin A-like lectin/glucanase, subgroup Domain 96 (1483) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013320 IPR008985 IPR010713 IPR000757 IPR016455


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)