Family GP001181


Family ID GP001181  add to my list RDF
Family name Cyclin-dependent kinase inhibitor family   suggest a name
Cross-reference(s) PMID:
Functional analysis of cyclin-dependent kinase inhibitors of Arabidopsis.
11449057 PMID:
A plant cyclin-dependent kinase inhibitor gene.
9087400
Family Ontology
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molecular_function
protein binding
GO:0005515 (3%) - protein binding
Curation status ?
Found in Tracheophyta plant-specific
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Cyclin-dependent kinase inhibitor family (plant-specificity: 100%)
GP001181 (246)
2 GP017581 (224) , GP110528 (3) , GP112114 (7) ,
(plant-specificity: 100%)
GP024514 (6) , GP114749 (4)
3 GP042238 (142) ,
(plant-specificity: 100%)
GP049467 (34) ,
(plant-specificity: 100%)
GP050570 (33) ,
(plant-specificity: 100%)
GP050258 (12) , GP122930 (7) ,
(plant-specificity: 100%)
GP124397 (5) , GP126809 (4) , GP128083 (3)
4 GP071661 (137) ,
(plant-specificity: 100%)
GP081048 (30) ,
(plant-specificity: 100%)
GP082854 (18) ,
(plant-specificity: 100%)
GP081726 (16) ,
(plant-specificity: 100%)
GP080716 (12) , GP137137 (7) ,
(plant-specificity: 100%)
GP139155 (5) , GP141122 (4) , GP142511 (4) , GP144090 (3) , GP144091 (3) , GP088692 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 246
Species Count (w/o splice) Count (w/ splice)
4 4
8 8
3 3
16 16
15 15
4 4
3 3
5 6
7 7
5 5
5 5
9 10
4 4
6 6
10 10
6 6
4 4
7 10
4 4
8 8
10 23
4 4
7 16
4 4
6 6
5 6
12 12
4 4
8 9
5 5
5 5
9 9
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Cyclin-dependent kinase inhibitor
IPR003175
Cyclin-dependent kinase inhibitor Family 82 (201) No
Cyclin-dependent kinase inhibitor, plant
IPR016701
Cyclin-dependent kinase inhibitor, plant Family 72 (178) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003175 IPR016701


Build your own display:   ?

Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
246 217 (88%) 201 (82%) [41; 210; 452] ~209 1430 104


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
246 201 (82%) 1.46518 1.2839 0.428638



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Species



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