Family GP001176


Family ID GP001176  add to my list RDF
Family name Triosephosphate isomerase family   suggest a name
Cross-reference(s) PMID:
Cytosolic triosephosphate isomerase is a single gene in rice.
8278510 PMID:
Nuclear gene encoding cytosolic triosephosphate isomerase from rice (Oryza sativa L.).
8108523
Family Ontology
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molecular_function
triose-phosphate isomerase activity
GO:0004807 (55%) - triose-phosphate isomerase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Triosephosphate isomerase family
GP001176 (254)
2 GP016250 (240) , GP112617 (9) , GP115213 (5)
3 GP040897 (227) ,
(plant-specificity: 100%)
GP048907 (13) , GP121813 (9) , GP125353 (5)
4 GP070288 (226) ,
(plant-specificity: 100%)
GP079056 (13) , GP135629 (9) , GP140411 (5) , GP089254 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 254
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
31 31
11 16
2 2
8 8
2 2
6 6
6 6
7 7
6 6
3 9
3 3
3 3
3 3
18 29
3 4
4 4
3 3
4 4
3 3
2 3
3 3
7 7
6 9
4 4
6 24
5 5
7 7
3 5
16 16
3 3
2 2
3 3
2 2
7 8
2 2


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Triosephosphate isomerase
IPR000652
Triosephosphate isomerase Family 83 (212) No
Regucalcin
IPR008367
Regucalcin Family 1 (1) Yes
Triosephosphate isomerase, bacterial/eukaryotic
IPR022896
Triosephosphate isomerase, bacterial/eukaryotic Family 55 (139) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aldolase-type TIM barrel
IPR013785
Aldolase-type TIM barrel Domain 83 (211) No
Triosephosphate isomerase, active site
IPR020861
Triosephosphate isomerase, active site Active_site 69 (176) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013785 IPR000652 IPR022896 IPR020861


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Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
254 206 (81%) 173 (68%) [44; 255; 1212] ~271 2279 214