Family GP001424


Family ID GP001424  add to my list RDF
Family name 6-phosphogluconolactonase family   suggest a name
Synonym(s) Glucosamine/galactosamine-6-phosphate isomerase, glucose-6-phosphate dehydrogenase
Cross-reference(s) PMID:
Structure and catalytic mechanism of glucosamine 6-phosphate deaminase from Escherichia coli at 2.1 A resolution.
8747459 PMID:
Identification of the cDNA encoding human 6-phosphogluconolactonase, the enzyme catalyzing the second step of the pentose phosphate pathway(1).
10518023
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
6-phosphogluconolactonase family (plant-specificity: 9%)
GP001424 (238)
2 GP016556 (196) , GP021994 (42)
3 GP041171 (196) , GP047151 (42)
4 GP070573 (195) , GP076984 (42)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 238
Species Count (w/o splice) Count (w/ splice)
1 1
3 3
12 12
3 6
3 3
4 4
4 4
6 6
4 4
9 9
8 8
5 8
4 4
3 3
5 5
6 14
5 5
10 10
7 7
6 6
3 3
6 6
4 4
11 11
5 13
4 4
8 13
5 5
7 7
3 6
8 8
6 6
5 5
5 5
5 6
7 8
6 6


Information to display




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IPR Annotation Type % Occurence Specificity
Glucosamine/galactosamine-6-phosphate isomerase
IPR006148
Glucosamine/galactosamine-6-phosphate isomerase Domain 78 (186) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006148
6-phosphogluconolactonase, DevB-type
IPR005900



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Species
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
238 206 (87%) 188 (79%) [76; 270; 1242] ~275 1629 176


Phylogenomic tree statistics:

Overall family sequences Sequences used for phylogeny (w/o splice and filtered seq.) Average branch length Median branch length Standard deviation
238 188 (79%) 3.42561 3.42762 0.196796



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