Family GP015102


Family ID GP015102  add to my list RDF
Family name Ubiquitin-conjugating family 1   suggest a name
Family Ontology
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N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Ubiquitin-conjugating superfamily (plant-specificity: 9%)
GP000049 (3080)
2
Ubiquitin-conjugating family 1
GP015102 (2267)
3 GP039825 (1908) , GP040840 (198) , GP041487 (150) , GP126114 (4) ,
(plant-specificity: 84%)
GP128175 (5)
4
Ubiquitin-conjugating enzyme E2 D/E , H, A, I, C, N subfamily
GP069413 (1686) , GP070248 (198) ,
NEDD8-conjugating enzyme Ubc12 subfamily
GP070870 (150) ,
Ubiquitin-conjugating enzyme E2 W subfamily
GP071597 (104) , GP072564 (77) ,
(plant-specificity: 19%)
GP132701 (34) ,
(plant-specificity: 84%)
GP139053 (5) , GP141461 (4) , GP088291 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 2267
Species Count (w/o splice) Count (w/ splice)
15 15
17 17
116 116
33 42
26 26
61 61
26 26
74 74
48 48
68 68
46 46
33 61
40 56
34 34
39 39
60 153
35 42
33 33
45 45
49 49
34 34
35 61
28 28
101 101
68 214
34 34
53 174
30 30
73 73
26 49
104 104
35 35
29 36
29 29
30 44
65 138
32 32


Information to display




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Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ubiquitin-conjugating enzyme, E2
IPR000608
Ubiquitin-conjugating enzyme, E2 Domain 92 (2075) No
Ubiquitin-conjugating enzyme/RWD-like
IPR016135
Ubiquitin-conjugating enzyme/RWD-like Domain 93 (2113) No
Ubiquitin-conjugating enzyme, active site
IPR023313
Ubiquitin-conjugating enzyme, active site Active_site 78 (1761) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR000608 IPR016135 IPR023313


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