Family GP015340


Family ID GP015340  add to my list RDF
Family name Myb transcription factor family   suggest a name
Synonym(s) GARP-G2-like transcription factor
Cross-reference(s) PMID:
APL regulates vascular tissue identity in Arabidopsis.
14614507
Family Ontology
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N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
(plant-specificity: 99%)
GP000168 (2078)
2
Myb transcription factor family
GP015340 (1650)
3 GP040250 (865) , GP040177 (471) , GP040537 (289) , GP124749 (6) , GP061390 (4) , GP126406 (4) , GP127041 (4) , GP056647 (3) , GP128934 (3) ,
(plant-specificity: 98%)
GP129107 (5)
4 GP069832 (625) , GP069743 (471) , GP070189 (277) ,
(plant-specificity: 99%)
GP076825 (210) ,
(plant-specificity: 100%)
GP134654 (11) ,
(plant-specificity: 97%)
GP135427 (9) , GP137817 (6) ,
(plant-specificity: 100%)
GP137830 (6) ,
(plant-specificity: 98%)
GP139124 (5) , GP141417 (4) , GP095055 (4) , GP141966 (4) , GP142783 (4) , GP088765 (3) , GP144701 (3) , GP088716 (3) , GP145518 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1650
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
44 50
16 16
34 34
24 24
72 72
55 55
52 52
41 41
37 48
35 45
30 30
30 30
40 65
29 32
27 27
34 34
46 46
32 32
26 44
24 24
88 88
46 107
32 32
53 121
28 28
47 47
25 53
54 54
27 27
40 45
29 29
38 50
71 128
37 37


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
SANT/Myb domain
IPR001005
SANT/Myb domain Domain 83 (1366) No
Myb domain, plants
IPR006447
Myb domain, plants Domain 84 (1386) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001005 IPR006447
Myb domain
IPR017930
MYB-CC type transcription factor, LHEQLE-containing domain
IPR025756



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Species
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