Family GP001342


Family ID GP001342  add to my list RDF
Family name Asparagine synthase, glutamine-hydrolyzing Family   suggest a name
Comment
Family Ontology
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molecular_function
asparagine synthase (glutamine-hydrolyzing) activity
GO:0004066 (67%) - asparagine synthase (glutamine-hydrolyzing) activity
biological_process
asparagine biosynthetic process
GO:0006529 (67%) - asparagine biosynthetic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Asparagine synthase, glutamine-hydrolyzing Family
GP001342 (224)
2 GP016448 (224)
3 GP041070 (224)
4 GP070467 (224)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 224
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
26 26
5 6
1 1
17 17
2 2
3 3
3 3
8 8
5 5
2 5
3 3
6 6
4 4
6 11
3 5
2 2
1 1
3 3
2 2
3 7
3 3
12 12
6 19
2 2
3 8
2 2
2 2
3 5
17 17
6 6
4 5
3 3
3 3
7 11
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Asparagine synthase, glutamine-hydrolyzing
IPR006426
Asparagine synthase, glutamine-hydrolyzing Family 67 (149) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Class II glutamine amidotransferase domain
IPR000583
Class II glutamine amidotransferase domain Domain 71 (159) No
Asparagine synthase
IPR001962
Asparagine synthase Domain 79 (177) No
Rossmann-like alpha/beta/alpha sandwich fold
IPR014729
Rossmann-like alpha/beta/alpha sandwich fold Domain 82 (184) No
Glutamine amidotransferase type 2 domain
IPR017932
Glutamine amidotransferase type 2 domain Domain 76 (170) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014729 IPR017932 IPR000583 IPR006426 IPR001962


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Species
Information to display
?


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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
224 184 (82%) 141 (63%) [46; 569; 742] ~476 1831 531