Family GP015408


Family ID GP015408  add to my list RDF
Family name Cytochrome b245, heavy chain family   suggest a name
Synonym(s) Respiratory burst oxidase homolog
Cross-reference(s) PMID:
The fission yeast ferric reductase gene frp1+ is required for ferric iron uptake and encodes a protein that is homologous to the gp91-phox subunit of the human NADPH phagocyte oxidoreductase.
8321236 PMID:
The glycoprotein encoded by the X-linked chronic granulomatous disease locus is a component of the neutrophil cytochrome b complex.
3600768
Family Ontology
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molecular_function
oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
GO:0050664 (78%) - oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Ferredoxin reductase-type FAD-binding superfamily (plant-specificity: 9%)
GP000286 (768)
2
Cytochrome b245, heavy chain family
GP015408 (464)
3 GP040075 (464)
4 GP069564 (464)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 464
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
3 3
5 5
15 15
16 16
6 6
20 20
14 14
13 13
10 10
11 19
9 12
16 16
12 12
16 25
12 12
6 6
7 7
10 10
9 9
10 14
12 12
12 12
13 27
8 8
11 14
8 8
9 9
9 10
21 21
18 18
18 20
8 8
9 9
20 29
11 11


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Cytochrome b245, heavy chain
IPR000778
Cytochrome b245, heavy chain Family 73 (339) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
EF-hand domain pair
IPR011992
EF-hand domain pair Domain 77 (357) No
FAD-binding 8
IPR013112
FAD-binding 8 Domain 80 (370) No
Ferric reductase, NAD binding
IPR013121
Ferric reductase, NAD binding Domain 79 (368) No
Ferric reductase transmembrane component-like domain
IPR013130
Ferric reductase transmembrane component-like domain Domain 79 (366) No
NADPH oxidase Respiratory burst
IPR013623
NADPH oxidase Respiratory burst Domain 78 (363) No
Ferredoxin reductase-type FAD-binding domain
IPR017927
Ferredoxin reductase-type FAD-binding domain Domain 78 (362) No
Riboflavin synthase-like beta-barrel
IPR017938
Riboflavin synthase-like beta-barrel Domain 79 (368) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR011992 IPR017938
EF-Hand 1, calcium-binding site
IPR018247 IPR013130 IPR013121 IPR000778 IPR013112 IPR017927 IPR013623



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.