Family GP015616


Family ID GP015616  add to my list RDF
Family name Na+/H+ exchanger family   suggest a name
Synonym(s) NHX
Cross-reference(s) PMID:
Vacuolar Na(+)/H(+) antiporter cation selectivity is regulated by calmodulin from within the vacuole in a Ca2(+)- and pH-dependent manner.
16249341 PMID:
Salt tolerance conferred by overexpression of a vacuolar Na(+)/H(+) antiport in Arabidopsis.
10455050 PMID:
Regulation of expression of the vacuolar Na(+)/H(+) antiporter gene AtNHX1 by salt stress and abscisic acid.
12369629 PMID:
Vacuolar cation/H(+) exchange, ion homeostasis, and leaf development are altered in a T-DNA insertional mutant of AtNHX1, the Arabidopsis vacuolar Na(+)/H(+) antiporter.
14535887 PMID:
Topological analysis of a plant vacuolar Na(+)/H(+) antiporter reveals a luminal C-terminus that regulates antiporter cation selectivity.
14530406
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Cation/H+ exchanger superfamily
GP000438 (549)
2
Na+/H+ exchanger family
GP015616 (417)
3 GP040546 (319) , GP043018 (98)
4 GP070008 (319) , GP072354 (98)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 417
Species Count (w/o splice) Count (w/ splice)
1 1
6 6
16 16
13 19
7 7
9 9
7 7
15 15
10 10
11 11
8 8
8 11
8 11
7 7
12 12
11 22
7 9
10 10
6 6
6 6
8 8
7 8
8 8
14 14
13 36
7 7
7 16
9 9
10 10
8 12
24 24
11 11
10 10
8 8
9 11
12 14
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Cation/H+ exchanger, CPA1 family, bacteria
IPR004705
Cation/H+ exchanger, CPA1 family, bacteria Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Cation/H+ exchanger
IPR006153
Cation/H+ exchanger Domain 77 (322) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR006153
Na+/H+ exchanger
IPR004709



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.