Family GP015749


Family ID GP015749  add to my list RDF
Family name Malate Dehydrogenase, NAD-Dependent, Eukaryote/Gamma Proteobacteria Subfamily   suggest a name
Cross-reference(s) PMID:
Expression of a single gene encoding microbody NAD-malate dehydrogenase during glyoxysome and peroxisome development in cucumber.
7858221 PMID:
A novel, non-redox-regulated NAD-dependent malate dehydrogenase from chloroplasts of Arabidopsis thaliana L.
9774405
Family Ontology
Close Hide
N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Lactate/malate dehydrogenase family (plant-specificity: 9%)
GP000624 (685)
2
Malate Dehydrogenase, NAD-Dependent, Eukaryote/Gamma Proteobacteria Subfamily
GP015749 (345)
3 GP040404 (345)
4 GP069857 (345)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 345
Species Count (w/o splice) Count (w/ splice)
3 3
29 29
8 8
4 4
16 16
4 4
8 8
8 8
15 15
11 11
7 11
6 7
6 6
7 7
7 11
6 9
7 7
7 7
6 6
6 6
6 10
4 4
24 24
8 16
5 5
12 25
5 5
9 9
5 7
18 18
6 6
6 6
5 5
3 4
12 14
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Malate dehydrogenase, type 1
IPR010097
Malate dehydrogenase, type 1 Family 76 (263) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Lactate/malate dehydrogenase, N-terminal
IPR001236
Lactate/malate dehydrogenase, N-terminal Domain 89 (308) No
Malate dehydrogenase, active site
IPR001252
Malate dehydrogenase, active site Active_site 75 (259) No
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
IPR015955
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Domain 87 (301) No
NAD(P)-binding domain
IPR016040
NAD(P)-binding domain Domain 90 (311) No
Lactate/malate dehydrogenase, C-terminal
IPR022383
Lactate/malate dehydrogenase, C-terminal Domain 86 (296) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016040 IPR015955
L-lactate/malate dehydrogenase
IPR001557 IPR001252 IPR001236 IPR022383 IPR010097



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)





[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

You can filter species displayed in the phylogenomic tree by checking the species you want:
Species