Family GP015702


Family ID GP015702  add to my list RDF
Family name Signal transduction histidine kinase, hybrid-type, ethylene sensor family   suggest a name
Synonym(s) ETR
Cross-reference(s) PMID:
The ethylene response mediator ETR1 from Arabidopsis forms a disulfide-linked dimer.
7759498 PMID:
Ethylene-binding sites generated in yeast expressing the Arabidopsis ETR1 gene.
8525372 PMID:
A copper cofactor for the ethylene receptor ETR1 from Arabidopsis.
9974395
Family Ontology
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molecular_function
protein binding
GO:0005515 (2%) - protein binding
biological_process
ethylene mediated signaling pathway
GO:0009873 (35%) - ethylene mediated signaling pathway
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
(plant-specificity: 9%)
GP000157 (1130)
2
Signal transduction histidine kinase, hybrid-type, ethylene sensor family
GP015702 (348)
3 GP040352 (348)
4 GP069809 (348)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 348
Species Count (w/o splice) Count (w/ splice)
9 11
4 4
9 9
2 2
9 9
8 8
11 11
7 7
8 15
7 7
8 8
7 7
8 12
6 6
4 4
9 9
28 28
5 5
5 6
4 4
16 16
8 23
4 4
9 22
13 13
11 11
3 7
21 21
7 7
7 8
5 5
6 6
14 25
8 8


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Signal transduction histidine kinase, phosphate regulon sensor PhoR
IPR014310
Signal transduction histidine kinase, phosphate regulon sensor PhoR Family 1 (1) Yes
Signal transduction histidine kinase, hybrid-type, ethylene sensor
IPR014525
Signal transduction histidine kinase, hybrid-type, ethylene sensor Family 35 (123) Yes
Protein of unknown function DUF3329
IPR021766
Protein of unknown function DUF3329 Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
GAF domain
IPR003018
GAF domain Domain 74 (259) No
Histidine kinase-like ATPase, ATP-binding domain
IPR003594
Histidine kinase-like ATPase, ATP-binding domain Domain 77 (269) No
Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain
IPR003661
Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain Domain 73 (254) No
Signal transduction histidine kinase, homodimeric domain
IPR009082
Signal transduction histidine kinase, homodimeric domain Domain 77 (268) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003594
CheY-like superfamily
IPR011006
Signal transduction histidine kinase, core
IPR005467
Signal transduction response regulator, receiver domain
IPR001789 IPR009082 IPR003661 IPR003018 IPR014525



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Species
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