Family GP000146


Family ID GP000146  add to my list RDF
Family name Kup potassium transporter family   suggest a name
Synonym(s) Kup system potassium uptake
Cross-reference(s) PMID:
Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray.
12164808
Comment
Family Ontology
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cellular_component
heterotrimeric G-protein complex
GO:0005834 (10%) - heterotrimeric G-protein complex
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Kup potassium transporter family (plant-specificity: 9%)
GP000146 (1440)
2 GP015459 (1392) , GP015127 (1188) ,
(plant-specificity: 33%)
GP109003 (53) , GP018124 (111) ,
(plant-specificity: 100%)
GP020489 (57) ,
(plant-specificity: 98%)
GP025818 (10) ,
(plant-specificity: 100%)
GP113277 (5) , GP035256 (4) , GP030336 (3)
3 GP039837 (1183) ,
(plant-specificity: 100%)
GP043940 (101) ,
(plant-specificity: 100%)
GP045910 (57) ,
(plant-specificity: 33%)
GP047190 (53) , GP121748 (10) ,
(plant-specificity: 98%)
GP052005 (10) ,
(plant-specificity: 100%)
GP124652 (5) ,
(plant-specificity: 100%)
GP124655 (5) , GP064141 (4) , GP057874 (3)
4 GP069359 (1183) , GP074582 (82) , GP078015 (53) ,
(plant-specificity: 33%)
GP077025 (53) ,
(plant-specificity: 100%)
GP081231 (14) ,
(plant-specificity: 98%)
GP082980 (10) , GP135013 (10) ,
(plant-specificity: 100%)
GP139563 (5) ,
(plant-specificity: 100%)
GP139564 (5) , GP141472 (4) , GP081807 (3) , GP090498 (3)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 1440
Species Count (w/o splice) Count (w/ splice)
2 2
9 9
2 2
23 25
16 16
59 59
39 39
39 39
27 27
49 49
33 33
35 56
32 34
31 31
39 39
44 72
39 39
27 27
26 26
31 31
27 27
18 22
28 28
71 71
37 87
25 25
48 88
25 25
36 36
23 38
63 63
43 43
51 51
25 25
28 33
59 91
32 32


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
K+ potassium transporter
IPR003855
K+ potassium transporter Family 73 (1046) No
Potassium uptake protein, low affinity, Kup
IPR023051
Potassium uptake protein, low affinity, Kup Family 1 (2) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR003855


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Species
Information to display
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(click on the button above to get your protein list)