Family GP016489


Family ID GP016489  add to my list RDF
Family name Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase family   suggest a name
Comment
Family Ontology
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molecular_function
shikimate 3-dehydrogenase (NADP+) activity
GO:0004764 (38%) - shikimate 3-dehydrogenase (NADP+) activity
binding
GO:0005488 (18%) - binding
biological_process
shikimate metabolic process
GO:0019632 (19%) - shikimate metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
(plant-specificity: 19%)
GP000998 (331)
2
Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase family
GP016489 (295)
3 GP041162 (289) ,
(plant-specificity: 100%)
GP123580 (6)
4 GP070562 (195) , GP073528 (91) ,
(plant-specificity: 100%)
GP138012 (6)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 295
Species Count (w/o splice) Count (w/ splice)
2 2
2 2
9 9
2 3
2 2
21 21
4 4
7 7
3 3
5 5
4 4
4 7
3 8
4 4
3 3
5 10
4 4
4 4
12 12
18 18
5 5
2 2
2 2
15 15
5 13
7 7
12 27
10 10
7 7
2 6
24 24
3 3
12 12
2 2
5 7
7 13
8 8


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Shikimate dehydrogenase
IPR011342
Shikimate dehydrogenase Family 19 (57) Yes
Shikimate, quinate/shikimate dehydrogenase
IPR022893
Shikimate, quinate/shikimate dehydrogenase Family 38 (112) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
NAD(P)-binding domain
IPR016040
Aldolase-type TIM barrel
IPR013785 IPR022893
Shikimate dehydrogenase substrate binding, N-terminal
IPR013708
Dehydroquinase class I
IPR001381



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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.