Family GP016933


Family ID GP016933  add to my list RDF
Family name Methylcrotonoyl-CoA carboxylase subunit alpha family   suggest a name
Synonym(s) Acetyl-CoA carboxylase, biotin carboxylase
Cross-reference(s) PMID:
Molecular cloning of the biotinylated subunit of 3-methylcrotonyl-coenzyme A carboxylase of Arabidopsis thaliana.
7716229 PMID:
Three-dimensional structure of the biotin carboxylase subunit of acetyl-CoA carboxylase.
7915138
Family Ontology
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molecular_function
acetyl-CoA carboxylase activity
GO:0003989 (30%) - acetyl-CoA carboxylase activity
biotin carboxylase activity
GO:0004075 (74%) - biotin carboxylase activity
pyruvate carboxylase activity
GO:0004736 (2%) - pyruvate carboxylase activity
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Carbamoyl phosphate synthase superfamily
GP001108 (381)
2
Methylcrotonoyl-CoA carboxylase subunit alpha family
GP016933 (288)
3 GP041572 (159) , GP042835 (129)
4 GP071026 (159) , GP072322 (129)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 288
Species Count (w/o splice) Count (w/ splice)
4 4
6 6
39 39
12 14
9 9
21 21
5 5
6 6
5 5
7 7
4 4
3 4
3 4
5 5
3 3
4 8
5 5
3 3
4 4
3 3
5 5
4 9
4 4
8 8
5 22
3 3
6 15
4 4
6 6
3 7
13 13
8 8
5 6
3 3
3 3
9 10
3 3


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Acetyl-CoA carboxylase, biotin carboxylase
IPR004549
Acetyl-CoA carboxylase, biotin carboxylase Family 19 (56) Yes
Pyruvate carboxylase
IPR005930
Pyruvate carboxylase Family 2 (5) Yes
Urea carboxylase
IPR014084
Urea carboxylase Family 1 (3) Yes
Oxaloacetate decarboxylase, bacterial
IPR023687
Oxaloacetate decarboxylase, bacterial Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
IPR005479
Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Domain 72 (206) No
Biotin carboxylation domain
IPR011764
Biotin carboxylation domain Domain 74 (213) No
ATP-grasp fold, subdomain 2
IPR013816
ATP-grasp fold, subdomain 2 Domain 72 (207) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
ATP-grasp fold
IPR011761 IPR013816
ATP-grasp fold, subdomain 1
IPR013815
Pre-ATP-grasp domain
IPR016185
Biotin carboxylase, C-terminal
IPR005482
Rudiment single hybrid motif
IPR011054
Carbamoyl-phosphate synthase, large subunit, N-terminal
IPR005481 IPR005479 IPR011764



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Species
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.