Family GP016018


Family ID GP016018  add to my list RDF
Family name Unannotated cluster   suggest a name
Curation status ?
Found in Embryophyta
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Signal transduction superfamily (plant-specificity: 60%)
GP000129 (2217)
2 GP016018 (284)
3 GP040658 (284)
4 GP070092 (284)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 284
Species Count (w/o splice) Count (w/ splice)
4 9
2 2
3 3
2 2
11 11
6 6
13 13
9 9
4 7
6 8
4 4
4 4
3 5
5 6
5 5
3 3
4 4
6 6
3 8
9 9
25 25
8 31
6 6
10 28
4 4
8 8
4 12
7 7
6 6
6 6
5 5
6 7
9 9
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Zinc finger, GATA-type
IPR000679
Zinc finger, GATA-type Domain 82 (233) No
Tify
IPR010399
Tify Domain 82 (233) No
CCT domain
IPR010402
CCT domain Domain 83 (237) No
Zinc finger, NHR/GATA-type
IPR013088
Zinc finger, NHR/GATA-type Domain 82 (233) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR013088 IPR000679 IPR010402 IPR010399


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Species
Information to display
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(click on the button above to get your protein list)