Family GP016987


Family ID GP016987  add to my list RDF
Family name Avirulence responsive subfamily   suggest a name
Cross-reference(s) PMID:
Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes.
8742710 PMID:
The roles of Toc34 and Toc75 in targeting the Toc159 preprotein receptor to chloroplasts.
12951325
Family Ontology
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molecular_function
binding
GO:0005488 (26%) - binding
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Aig1 domain containing family (plant-specificity: 9%)
GP001717 (280)
2
Avirulence responsive subfamily
GP016987 (277)
3 GP041631 (277)
4 GP071021 (192) , GP073389 (85)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 277
Species Count (w/o splice) Count (w/ splice)
1 1
9 9
5 7
2 2
27 27
4 4
4 4
3 3
6 6
5 5
4 5
4 9
3 3
4 4
3 8
3 3
5 5
8 8
6 6
2 2
15 21
2 2
31 31
3 11
3 3
4 16
2 2
5 5
8 11
6 6
9 9
9 9
3 3
7 7
7 15
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
AIG1
IPR006703



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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.