Family GP017257


Family ID GP017257  add to my list RDF
Family name High mobility group B family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
ARID/BRIGHT DNA-binding superfamily (plant-specificity: 60%)
GP001785 (494)
2
High mobility group B family
GP017257 (266)
3 GP041875 (172) , GP045773 (94)
4 GP071285 (172) , GP075412 (65) ,
(plant-specificity: 100%)
GP133594 (16) ,
(plant-specificity: 14%)
GP134109 (13)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 266
Species Count (w/o splice) Count (w/ splice)
2 2
4 4
1 1
4 4
3 3
15 15
7 7
9 9
7 7
9 9
10 10
4 5
4 5
4 4
3 3
5 8
4 4
5 5
6 6
5 5
5 5
6 6
5 5
14 14
7 16
6 6
8 17
4 4
7 7
5 8
10 10
12 12
5 5
4 4
6 8
10 17
6 6


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
ARID/BRIGHT DNA-binding domain
IPR001606



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.