Family GP016095


Family ID GP016095  add to my list RDF
Family name DNA photolyase class-1 family   suggest a name
Synonym(s) Cryptochrome
Cross-reference(s) PMID:
An Arabidopsis circadian clock component interacts with both CRY1 and phyB.
11260718 PMID:
The CRY1 blue light photoreceptor of Arabidopsis interacts with phytochrome A in vitro.
9651577 PMID:
The signaling mechanism of Arabidopsis CRY1 involves direct interaction with COP1.
11752373 PMID:
Linkage disequilibrium mapping of Arabidopsis CRY2 flowering time alleles.
15280248 PMID:
CRYPTOCHROME2 in vascular bundles regulates flowering in Arabidopsis.
17259260
Family Ontology
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molecular_function
protein binding
GO:0005515 (1%) - protein binding
identical protein binding
GO:0042802 (1%) - identical protein binding
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
DNA photolyase superfamily
GP000709 (401)
2
DNA photolyase class-1 family
GP016095 (259)
3 GP041105 (189) , GP046440 (70)
4 GP070539 (189) , GP076143 (68)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 259
Species Count (w/o splice) Count (w/ splice)
5 5
2 2
22 22
3 6
4 4
8 8
4 4
4 4
4 4
3 3
5 5
4 11
4 8
5 5
4 4
7 17
4 6
3 3
3 3
4 4
3 3
3 5
3 3
7 7
5 24
3 3
5 14
4 4
5 5
2 3
11 11
7 7
5 6
4 4
5 9
10 18
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Cryptochrome, plant
IPR014134
Cryptochrome, plant Family 56 (145) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
DNA photolyase, FAD-binding/Cryptochrome, C-terminal
IPR005101
DNA photolyase, FAD-binding/Cryptochrome, C-terminal Domain 91 (235) No
DNA photolyase, N-terminal
IPR006050
DNA photolyase, N-terminal Domain 84 (218) No
Rossmann-like alpha/beta/alpha sandwich fold
IPR014729
Rossmann-like alpha/beta/alpha sandwich fold Domain 82 (212) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR014729 IPR005101
Cryptochrome/DNA photolyase, class 1
IPR002081 IPR006050
Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal
IPR018394 IPR014134
Cryptochrome C-terminal
IPR020978



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