Family GP016322


Family ID GP016322  add to my list RDF
Family name Geranylgeranyl pyrophosphate synthetase subfamily   suggest a name
Cross-reference(s) PMID:
Geranylgeranyl pyrophosphate synthase encoded by the newly isolated gene GGPS6 from Arabidopsis thaliana is localized in mitochondria.
9349257 PMID:
Five geranylgeranyl diphosphate synthases expressed in different organs are localized into three subcellular compartments in Arabidopsis.
10759500 PMID:
Cloning and functional expression of a novel geranylgeranyl pyrophosphate synthase gene from Arabidopsis thaliana in Escherichia coli.
9150607
Curation status ?
Found in No specificity
Phylogenetic analyzes Not available




Clustering level Family ID (number of sequences)
1
Polyprenyl synthetase family
GP000470 (471)
2
Geranylgeranyl pyrophosphate synthetase subfamily
GP016322 (251)
3 GP040949 (251)
4 GP070357 (251)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 251
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
17 17
2 2
5 5
25 25
4 4
8 8
8 8
18 18
3 3
4 7
3 3
4 4
4 4
5 5
2 2
5 5
7 7
7 7
3 3
12 12
4 4
10 10
13 13
6 6
7 8
4 4
6 6
4 4
10 10
7 7
4 4
4 4
6 6
10 10
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Polyprenyl synthetase
IPR000092
Polyprenyl synthetase Family 89 (224) No

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Terpenoid synthase
IPR008949
Terpenoid synthase Domain 92 (232) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR008949 IPR000092


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)