Family GP016127


Family ID GP016127  add to my list RDF
Family name DEMETER family   suggest a name
Cross-reference(s) PMID:
DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis.
12150995 PMID:
DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.
16624880
Family Ontology
Close Hide
N/A
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
DNA glycosylase superfamily (plant-specificity: 80%)
GP000965 (298)
2
DEMETER family
GP016127 (250)
3 GP040747 (250)
4 GP070182 (250)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 250
Species Count (w/o splice) Count (w/ splice)
1 1
7 7
3 4
1 1
6 6
2 2
3 3
3 3
10 10
11 11
6 6
5 6
4 4
5 5
6 9
4 4
2 2
4 4
10 10
3 3
5 7
3 3
8 8
4 21
6 6
8 15
3 3
6 6
4 5
24 24
15 15
16 16
4 4
3 3
7 8
5 5


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
DNA glycosylase
IPR011257
Helix-turn-helix, base-excision DNA repair, C-terminal
IPR023170
HhH-GPD domain
IPR003265
Endonuclease III-like, iron-sulphur cluster loop motif
IPR003651



Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.