Family GP015766


Family ID GP015766  add to my list RDF
Family name Lethal leaf-spot 1 homolog family   suggest a name
Cross-reference(s) PMID:
Chlorophyll breakdown: pheophorbide a oxygenase is a Rieske-type iron-sulfur protein, encoded by the accelerated cell death 1 gene.
14657372 PMID:
The Arabidopsis-accelerated cell death gene ACD1 is involved in oxygenation of pheophorbide a: inhibition of the pheophorbide a oxygenase activity does not lead to the 'Stay-Green' phenotype in Arabidopsis.
14701922
Family Ontology
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molecular_function
chlorophyllide a oxygenase [overall] activity
GO:0010277 (76%) - chlorophyllide a oxygenase [overall] activity
Curation status ?
Found in Viridiplantae
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pheophorbide a oxygenase superfamily
GP000606 (374)
2
Lethal leaf-spot 1 homolog family
GP015766 (243)
3 GP040591 (196) , GP046464 (47)
4 GP070939 (141) , GP132536 (48) , GP076175 (47) , GP133935 (14)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 243
Species Count (w/o splice) Count (w/ splice)
9 9
29 29
6 7
2 2
4 4
4 4
4 4
4 4
6 6
8 8
7 7
3 3
4 4
7 7
3 4
4 4
4 4
4 4
6 6
8 8
3 4
4 4
9 9
5 5
3 3
11 19
7 7
8 8
8 8
11 11
11 11
7 7
3 3
4 4
8 9
3 3


Information to display




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Close InterPro family

No IPR family


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IPR Annotation Type % Occurence Specificity
Pheophorbide a oxygenase
IPR013626
Pheophorbide a oxygenase Domain 76 (184) No
Rieske [2Fe-2S] iron-sulphur domain
IPR017941
Rieske [2Fe-2S] iron-sulphur domain Domain 76 (185) No

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Clustering
 



Close Representative InterPro domains - Consensus schema
IPR017941 IPR013626


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Species
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.