Family GP016238


Family ID GP016238  add to my list RDF
Family name Glutamate decarboxylase subfamily   suggest a name
Cross-reference(s) PMID:
Molecular and biochemical analysis of calmodulin interactions with the calmodulin-binding domain of plant glutamate decarboxylase.
7610159
Family Ontology
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molecular_function
glutamate decarboxylase activity
GO:0004351 (73%) - glutamate decarboxylase activity
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016616 (1%) - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
biological_process
glutamate metabolic process
GO:0006536 (73%) - glutamate metabolic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Pyridoxal phosphate-dependent decarboxylase family (plant-specificity: 9%)
GP000971 (310)
2
Glutamate decarboxylase subfamily
GP016238 (240)
3 GP040726 (240)
4 GP070274 (240)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 240
Species Count (w/o splice) Count (w/ splice)
1 1
6 7
1 1
22 22
4 4
5 5
5 5
6 6
4 4
6 10
5 5
7 7
6 6
5 9
5 7
5 5
5 5
5 5
4 4
6 8
4 4
5 5
5 8
3 3
7 17
5 5
9 9
4 5
10 10
6 6
7 7
3 3
7 7
10 11
14 14


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Pyridoxal phosphate-dependent decarboxylase
IPR002129
Pyridoxal phosphate-dependent decarboxylase Family 88 (211) No
Glutamate decarboxylase
IPR010107
Glutamate decarboxylase Family 73 (176) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015421
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 Domain 82 (197) No
Pyridoxal phosphate-dependent transferase
IPR015424
Pyridoxal phosphate-dependent transferase Domain 90 (215) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR015421 IPR015424 IPR002129 IPR010107


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Species
Information to display
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Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.