Family GP001439


Family ID GP001439  add to my list RDF
Family name Ribosomal protein l5 family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein l5 family (plant-specificity: 19%)
GP001439 (205)
2 GP017041 (162) ,
(plant-specificity: 84%)
GP022198 (43)
3 GP041685 (161) ,
(plant-specificity: 84%)
GP047367 (43)
4 GP071083 (161) ,
(plant-specificity: 84%)
GP077215 (43)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 205
Species Count (w/o splice) Count (w/ splice)
1 1
2 2
15 15
5 8
2 2
4 4
2 2
7 7
3 3
6 6
4 4
3 3
4 4
2 2
3 3
4 10
3 4
3 3
5 5
4 4
5 5
3 6
3 3
8 8
7 21
3 3
5 10
3 3
5 5
3 3
9 9
4 4
7 7
3 3
4 5
8 14
4 4


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein L18/L5
IPR005484
Ribosomal protein L18/L5 Family 66 (135) No
Ribosomal protein L5 eukaryotic/L18 archaeal
IPR005485
Ribosomal protein L5 eukaryotic/L18 archaeal Family 70 (143) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal
IPR025607
Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal Domain 62 (127) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005484 IPR005485 IPR025607


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Species
Information to display
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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
205 166 (81%) 147 (72%) [66; 301; 1199] ~319 2395 241




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