Family GP016255


Family ID GP016255  add to my list RDF
Family name CPP transcription factor family   suggest a name
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
(plant-specificity: 50%)
GP104231 (465)
2
CPP transcription factor family
GP016255 (210)
3 GP040948 (206) , GP060780 (4)
4 GP070597 (206) , GP088934 (4)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 210
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
1 1
6 7
2 2
6 6
2 2
4 4
4 4
5 5
7 7
8 11
5 5
4 4
4 4
10 16
5 5
2 2
2 2
2 2
4 4
4 4
5 5
9 9
6 25
5 5
10 18
5 5
6 6
2 2
8 8
3 3
6 6
2 2
3 3
7 11
3 3


Information to display




(click on chart bars above to get species proteins)


Close InterPro family

No IPR family


Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
CRC domain
IPR005172
CRC domain Domain 80 (168) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR005172


Build your own display:   ?

Species
Information to display
?


(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.