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Family GP001534


Family ID GP001534  add to my list RDF
Family name Ribosomal protein s6e family   suggest a name
Synonym(s) Small subunit ribosomal protein s6e
Cross-reference(s) PMID:
The ribosome in focus.
11290319
Family Ontology
Close Hide
N/A
Curation status ?
Found in No specificity
Phylogenetic analyzes Phylogeny done




Clustering level Family ID (number of sequences)
1
Ribosomal protein s6e family (plant-specificity: 70%)
GP001534 (203)
2 GP016704 (202)
3 GP041333 (202)
4 GP070728 (202)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
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    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 203
Species Count (w/o splice) Count (w/ splice)
1 1
1 1
15 15
6 7
1 1
2 2
3 3
5 5
6 6
5 5
4 4
2 2
2 4
2 2
2 2
4 13
2 3
2 2
3 3
3 3
3 3
2 4
3 3
5 5
13 28
3 3
5 19
5 5
6 6
4 4
6 6
4 4
3 3
1 1
5 6
11 14
5 5


Information to display




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Close InterPro family
IPR Annotation Type % Occurence Specificity
Ribosomal protein S6e
IPR001377
Ribosomal protein S6e Family 83 (169) No
Ribosomal protein S6, eukaryotic
IPR014401
Ribosomal protein S6, eukaryotic Family 69 (141) Yes

Close Other InterPro signatures

No other significant IPR (i.e. > 25%)


Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR001377 IPR014401
Ribosomal protein S6e, conserved site
IPR018282



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Species
Information to display
?


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[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

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Species




Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
203 155 (76%) 135 (67%) [50; 249; 532] ~224 1090 249




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Species



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