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Family GP001467


Family ID GP001467  add to my list RDF
Family name Delta-1 - pyrroline - 5 - carboxylate synthetase family   suggest a name
Cross-reference(s) PMID:
Characterization of the gene for delta1-pyrroline-5-carboxylate synthetase and correlation between the expression of the gene and salt tolerance in Oryza sativa L.
9106509 PMID:
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks.
19376835 PMID:
Differential expression of two P5CS genes controlling proline accumulation during salt-stress requires ABA and is regulated by ABA1, ABI1 and AXR2 in Arabidopsis.
9351242 PMID:
Correlation between the induction of a gene for delta 1-pyrroline-5-carboxylate synthetase and the accumulation of proline in Arabidopsis thaliana under osmotic stress.
7773306
Family Ontology
Close Hide
molecular_function
glutamate 5-kinase activity
GO:0004349 (70%) - glutamate 5-kinase activity
glutamate-5-semialdehyde dehydrogenase activity
GO:0004350 (55%) - glutamate-5-semialdehyde dehydrogenase activity
biological_process
proline biosynthetic process
GO:0006561 (55%) - proline biosynthetic process
Curation status ?
Found in No specificity
Phylogenetic analyzes Did not pass filtration




Clustering level Family ID (number of sequences)
1
Delta-1 - pyrroline - 5 - carboxylate synthetase family
GP001467 (202)
2 GP016630 (181) , GP109993 (21)
3 GP041249 (173) , GP119728 (21) , GP122295 (8)
4 GP070663 (172) , GP133108 (21) , GP136276 (8)
Table 1: This table displays which relationship has the selected family with other families in GreenPhyl clustering ?.




Legend:
  • Families (clustering)
    • Sequences are clustered and classified at 4 levels (from less to more stringent).
    • The number between parenthesis indicates the number of sequences in the cluster.
    • Selected family is highlighted like this.
    • Annotated gene families are underlined and gene family name pops up when you move your mouse cursor over.
    • Gene families are coloured in this color when the phylogenetic analyses are available.


Sequence total: 202
Species Count (w/o splice) Count (w/ splice)
2 2
3 3
33 33
1 2
2 2
8 8
1 1
4 4
2 2
5 5
2 2
2 3
3 7
2 2
2 2
5 12
3 5
2 2
2 2
3 3
2 2
2 6
1 1
11 11
4 8
2 2
2 6
3 3
3 3
2 5
4 4
10 10
6 8
8 8
4 4
8 15
4 4


Information to display




(click on chart bars above to get species proteins)


Close InterPro family
IPR Annotation Type % Occurence Specificity
Glutamate/acetylglutamate kinase
IPR001057
Glutamate/acetylglutamate kinase Family 72 (145) No
Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase
IPR005715
Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase Family 59 (120) No
Delta l-pyrroline-5-carboxylate synthetase
IPR005766
Delta l-pyrroline-5-carboxylate synthetase Family 55 (112) Yes
Glutamate 5-kinase
IPR011529
Glutamate 5-kinase Family 8 (16) Yes
Glutamate-5-semialdehyde dehydrogenase
IPR012134
Glutamate-5-semialdehyde dehydrogenase Family 1 (1) Yes

Close Other InterPro signatures
IPR Annotation Type % Occurence Specificity
Aspartate/glutamate/uridylate kinase
IPR001048
Aspartate/glutamate/uridylate kinase Domain 76 (153) No
Aldehyde/histidinol dehydrogenase
IPR016161
Aldehyde/histidinol dehydrogenase Domain 77 (156) No
Aldehyde dehydrogenase, N-terminal
IPR016162
Aldehyde dehydrogenase, N-terminal Domain 77 (155) No
Aldehyde dehydrogenase, C-terminal
IPR016163
Aldehyde dehydrogenase, C-terminal Domain 70 (142) No
Glutamate 5-kinase, conserved site
IPR019797
Glutamate 5-kinase, conserved site Conserved_site 70 (142) No

Close Domain architecture
Clustering
 



Close Representative InterPro domains - Consensus schema
IPR016163
Gamma-glutamyl phosphate reductase GPR, conserved site
IPR020593 IPR001048 IPR016161 IPR016162 IPR001057 IPR005766
Gamma-glutamyl phosphate reductase GPR
IPR000965 IPR019797 IPR005715



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Species
Information to display
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(click on the button above to get your protein list)


Alignment not available.
[Masking step 1 details] [Masking step 2 details] [Filtration details] [Global HMM file]

Phylogeny tree not available.


Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
202 163 (81%) 103 (51%) [72; 677; 1061] ~549 1949 653